NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114129_10309142

Scaffold Ga0114129_10309142


Overview

Basic Information
Taxon OID3300009147 Open in IMG/M
Scaffold IDGa0114129_10309142 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2104
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019352Metagenome / Metatranscriptome230Y
F050241Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0114129_103091421F019352AGGAGGMHPLPERGMLALVCLNLALQVFDGVATYVGLHAGMAEGNPLLAWALAQLGPASALFIFKLQACACLLLLWRVRRNRLAAPALVLSAAIYVVCSLAPWAAALATLQWEYWAL*
Ga0114129_103091425F050241GGAGGMESAVEEEVEPQAVVFVCDRQGAALGRRERCLKLAGIPFGVEAERRPSGTYYKLYVRERDAVAAHLALQMGGCGRSSRLHQPQASVL
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