NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114918_10027188

Scaffold Ga0114918_10027188


Overview

Basic Information
Taxon OID3300009149 Open in IMG/M
Scaffold IDGa0114918_10027188 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4153
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002495Metagenome / Metatranscriptome554Y
F003365Metagenome / Metatranscriptome491Y
F005537Metagenome / Metatranscriptome397Y
F008307Metagenome / Metatranscriptome335Y
F012861Metagenome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0114918_1002718812F003365AGGMLKTIGKEWTKKEDGGCFTADHMSPSQLNKSLDLWFNDYVVLTAEQRKSLFGNLNMDIGAIVGQAVQDMVVHNLTLEEVMKGKK*
Ga0114918_1002718813F012861GGAGMKKYNKIKEKINNLEEINFTAKEFHLIFEMAGFDLLSNSEMRSLILAFCEKLNPELSTREYDKIKSHHPDL*
Ga0114918_100271885F008307AGTAGMVRVLKKSSLELMADIEEFFDGATVEEATEKAHNQKMPGELAKINITDNKFIKATIKMVGEEYDDRSKKNIGTEKATR*
Ga0114918_100271887F005537AGAAGGMSDNIKFINNLEKLLHEKQGDYGHFDHTSFAMAGMIEKYLTIYNNKEVKVPLKFFGLFMIFLKSWRIMQSKEYKKDSFDDINGYTELLRRLVVDENKAKRS*
Ga0114918_100271889F002495N/AMPINNSNNGSGKQKDWVLFPFDATNEKSIKLDFSGNINLDNGNKGTILGVKGSSRDGNTKFVKIFAQVGVLFKGDDKFTGDMNYPEAGGHKGLIGWVNESGNILSGYKNEPRPKQDSPKKETPIQPKAESKEILF*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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