NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114918_10113259

Scaffold Ga0114918_10113259


Overview

Basic Information
Taxon OID3300009149 Open in IMG/M
Scaffold IDGa0114918_10113259 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1665
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008616Metagenome / Metatranscriptome330Y
F008811Metagenome / Metatranscriptome327N
F030061Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0114918_101132592F030061AGTAGGMPLSTLRAGLKSAITSNTNYSAYDHVPEIIVPPAALILASDPYLEPIVIGNSNNYYVRLTLEIVSSTYSNQSALTNLEDDIETVLGLIPLNFIVLSVSSPRIRSTNSTDLLSAEIQLQTAYTG*
Ga0114918_101132593F008811AGGMATTILSGRQLILSVNGVNYSEQITSSAINFDTERLTFDTLAGKAYKYIDSNVTLDVEFLNDAGASPNSLYKVLWDGTELAPDTTIAFILTLQTGVTLTGYVLPQYPSITGSGLDVQTCSVSLQVVGIPTEDLAV*
Ga0114918_101132594F008616AGGMLKLKLTWEMETGEKFEEWTRPIELSLAEKELYNNKSIVKILIDESTPSNTLLLFLAHKIQQRVSKKIENFDTWKTKVTDIAASDFETANFTKPEVSGE*
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