NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10000028

Scaffold Ga0114962_10000028


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10000028 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)108013
Total Scaffold Genes163 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)125 (76.69%)
Novel Protein Genes20 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Associated Families20

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000376Metagenome / Metatranscriptome1216Y
F000447Metagenome / Metatranscriptome1128Y
F000671Metagenome / Metatranscriptome945Y
F001106Metagenome / Metatranscriptome776Y
F001562Metagenome / Metatranscriptome670Y
F002489Metagenome / Metatranscriptome554Y
F002935Metagenome519Y
F005741Metagenome / Metatranscriptome391Y
F008245Metagenome / Metatranscriptome336N
F008814Metagenome / Metatranscriptome327Y
F011299Metagenome / Metatranscriptome292Y
F011394Metagenome / Metatranscriptome291Y
F014140Metagenome / Metatranscriptome265Y
F026561Metagenome / Metatranscriptome197Y
F051930Metagenome / Metatranscriptome143Y
F066776Metagenome / Metatranscriptome126Y
F074872Metagenome / Metatranscriptome119Y
F076101Metagenome / Metatranscriptome118Y
F103268Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_100000281F002935GAGGMSDRTKGYTGTLVDGKKLAVIANGIYNLQYSSDFSECTVDSLLFIELEEKNVFGDSKYALVCSEGVGWEQDTYGCLEVPTNIGAMGLWNGRVFISVDTVKSCLTDRTEDISDYIRVFGSRLDSNCSLWQSKMSVAPATILA*
Ga0114962_10000028103F008245GAGMAEDKNTLQLIGDITEFNDLHEFMQDEHLDKALAIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTINNNKKNVYYSVKESIDKLVDALKYVVRYNS*
Ga0114962_10000028111F000369N/AMSELEPAVHFDRMNKVVEELLKGNSATQIATITGFSRKEVVEFIDEWKTVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADQSGQLNIKANALKLISDIETKRIGMLQSVGILENNELASQIADTERKQDILVGILKEVTASCPKCKMEVAKRLSQITGIVEPIVIESQNVV*
Ga0114962_10000028113F000376GGAMSEYQELAKQCKCCSKHVPLPTSMKMYEEIILCPTTFSNVVEYKRIWLSYGSRPMGSIRKHFSEYVQQIVESTIDKNNINTIELSSKQQ*
Ga0114962_1000002812F011299AGGMTMTRKHFEQIAEILKYNSNKTHPAVFSKMVLDFAEMCANENPNFNVNKFHEASGYHVPKFTSR*
Ga0114962_10000028128F014140N/AMNNYSVKLNVELEISAFNLEDASEYVHDIFNIDDEIKKVSIVKIQENK*
Ga0114962_10000028129F066776GGAMLHLNLKGVEVFIDKFKKDNQISFWNNYDLVIWKKDIGGFTDIKGMYLNNTWGKAEKISVTNEGIWKLPKRYVKYFK*
Ga0114962_1000002813F076101GGAMYKITLAYDENAPHWQQDYANEFDAWKDFFAFVDWGFADKFSTVNIYTPALKCYTKIFYREERKVVTVK*
Ga0114962_10000028131F011394AGGMEFINKDKDHFKYGINQWTGEPNKPVFYNKEMALKIRELIKPAKDLRMDIAKYPDFLAIRLYEDNFTQYDGSMKMRVIDYVEMVKKIIESYGVRCELEGVPGARKL*
Ga0114962_10000028134F000671GGAGGMEKVLCYCCNKSKFKLNAKRSVLLPINLLMCETCINNKLEPRWVIILAGRQFGADVVKEHVLKKKYVGETISASELLV*
Ga0114962_10000028140F008814N/AMTVLEGIVKDIGEELYQKWYNGLAVEDRTEEASKAMASNAGETALWVIQEFMNRFNNAAEELKDK*
Ga0114962_10000028149F026561AGTAGMSINIRKDDGTGMTPPPNDSPSGSVTSRTTINRNPRQGLKVDRNRHGIRRETNTTPQPPKKTRPKKV*
Ga0114962_1000002817F001562AGGAGMKSQFELDLEIKESFIDLLNDVYPVVKIGYSTFTPAEILECCDPIAFAIGLVEHEDYLAELEE*
Ga0114962_1000002821F000447GAGGMGYVQLFRMDNEGAGWVDLADATPDELFQIEIGLLNEGAL*
Ga0114962_1000002834F002489GAGGMQEDQNNENSSNLEENLPMVTYIMLHRIYDLLTLISNKVVGGDDTAKMVEYHNQGYLLGPSPSYTPKDENE*
Ga0114962_1000002836F051930AGGAGMRIQYVSTYISMSKDGLVHGFLCPMDQSFLFCNQDLKDNIYLYCLDCNYKNYIGINTYQNIVKEVESNGKNNKM*
Ga0114962_100000284F005741AGGMARFRIEIYDANKLNDVTIYSEQGVDKEYLTELVFSNLQKFSGRVNAYVFDNQKKKKTTALFLDEAIVTKAKSYSTGLTAKELGLS*
Ga0114962_100000286F074872AGGGGGMSAPYGKILTYKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSDSALTNA*
Ga0114962_1000002866F001106AGGAGMSFDTLKVAELKKIAEDFAVDTDSLKNKKDIIAALAEEGVTYSIYEKTLKDIEDATEEIEILPTKFDISSVPEDTVLVRMTRDNFRYDIMGQTFTKEHPFVAMSEEDAQKIFDSEEGFRLATPKEVQDFYN*
Ga0114962_1000002870F103268GGAGGMTDYKLDAMYEIRKHLWNELVDKNIFEPSEYYSDNIGQELIPILPVQQQPELNQFLSGKKHIVFDKIGSSYNNLWTICDEKIMFTIYAIDIDDITEIRNLIIDVFRRMDDSAKDMNLAMPSSKFKYHNILILDISPTAPSMELQGFLSADIVIEVKYSRITDRAGRFN*
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