Scaffold Ga0114962

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10000265 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009151 Open in IMG/M

Scaffold ID

Ga0114962_10000265 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	45498
Total Scaffold Genes	88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	62 (70.45%)
Novel Protein Genes	13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Associated Families	13

Scaffold Components

Scaffold Length (bps)

45498

Total Scaffold Genes

88 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

62 (70.45%)

Novel Protein Genes

13 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

12 (92.31%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015732	Metagenome / Metatranscriptome	252	N
F018930	Metagenome	232	Y
F020690	Metagenome / Metatranscriptome	222	N
F022415	Metagenome / Metatranscriptome	214	Y
F034459	Metagenome	174	N
F046380	Metagenome / Metatranscriptome	151	N
F048314	Metagenome / Metatranscriptome	148	Y
F050153	Metagenome / Metatranscriptome	145	Y
F057381	Metagenome / Metatranscriptome	136	N
F059007	Metagenome	134	N
F068423	Metagenome / Metatranscriptome	124	N
F072350	Metagenome / Metatranscriptome	121	N
F074407	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100002652	F034459	AGG	MNVALIFVGISFGHKSERDFNHCFPNIDRNIIQPLKKNHSVHNYVVTYDNDRMDEVNKLLNPKKLISISFEGSHQNTTRTKASTVTGNDYIDFYIMTRFDIHYNKSLEEFNLDWDKFNITSREGNGFWESQQFVGDTFYAWPKRLHDQVVQGFNVLTNGEVKYDFNHMHNFYSILAPIMGAENIHFMSEEPQLSGHLLTSLCTRDYCDRLRSKIPINEEILARFP*
Ga0114962_1000026522	F020690	AGGAG	MISEIKSTDKMVSKGIYMSASAIYTHTKSAKVIALMIKRSLPEFRKQLDLPRDVQFRVAPIKAKNTNGYYMVEGKLAVIDCRLGWAKALEVIAHELVHAEQYHIGKLKKKYVQRKGWLHHWNGTPGKKGTTYKAYRDQPWEQEAWNRQMYLAETVCSILEEKYP*
Ga0114962_1000026529	F048314	AGG	MMKDSIEQAAEMLILGYTEHEIVRILRIHPSMAEELIQKAEQWNDQEFVPYTEEVVDEMADYYGEE*
Ga0114962_1000026531	F015732	AGGA	MTKVTNLETAVSIVRNTPDKALALSEIMNILGVSRSNAFVYHTKASKILFSASNVDEVMAKVSPQYKKVSESVQGTTATKKAQKLKEIDAFLANAPTAKGNPFAALGA*
Ga0114962_1000026533	F046380	GGAG	MSNWKTLDQSFETMSQAEALDIVQQEAVSMGMGLLETMTWMSDNYDELDSVQRNAFRTAFRGFQRLLAPVTE*
Ga0114962_1000026535	F022415	AGGAG	MSRMSELHMLITDAIACDLSEDLIIDLMVEEGLPREACPEILRVFKQVEAV*
Ga0114962_1000026548	F074407	N/A	MNKKIKALAIEAGLYVDFNGEPWPKNMTGEDIEGAYEKFAVLLINECAKKVDKVRRQGGWFYGEIIRKEFGLYDRD*
Ga0114962_1000026554	F072350	AGGAG	MQDYYKAKFTYDYDDKRMRYDVTEWDNPVNGVRLGKVVFYSDVMEECIAMAEEYNYNYKCGQEWELFNNQECEFV*
Ga0114962_1000026556	F050153	GAGG	MSKGSRARPLGVDFDKYSSNWNSVFGKSPKEIDDAVIEDEAFKLIEERNKNVISDQKPD*
Ga0114962_1000026557	F068423	GAGG	MDEDFDFNFPMEINYEKILTNNSILPMVRLLAADLMKNPYMSIGTFLQRARTDDLQLILEASEDEEDERLSDILLLAEMLAKAEGVETECIEDVYKHLNSFITLAAVASLERKGLIIADYDVMSFGEEYAHSTIAKRKP*
Ga0114962_1000026559	F057381	AGGAG	MRYFFNDVEVTATEYTDLINKSTPDVPAKFVMAIPVERAVTKPKPLPKKSVAKPASSGASKIDQAIELFKNNQGLTDAQFVTLFQLKLGDISKGNASIYLKKVKERTK*
Ga0114962_1000026577	F018930	AGAAG	MTWYANSEGRYGAKGAKGDLGEAIVEEYCKTNNILFEDRNDIISQVRLKIDCIINGIPVDVKANYYMGTLCVELFNNKKQQAGWLYTTSAKQIYGVDVDTKSIYRYNIEDMITYVSNNEHRAKKTKYDDTVIWAPVALDIIEKLQ*
Ga0114962_1000026581	F059007	AGG	MPVKVYYYIKDKDGYASEDKTYESIPEDEDGLFLWQHINKARKLAGVPRERFFIINTSCSPRKKPTWINPDWPLAPFPKLKKARLAFGRYVIEKPPEPVDPDYD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114962_10000265

Overview

Ecosystem & Geography

Associated Families

Sequences