Scaffold Ga0114962

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10000450 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009151 Open in IMG/M

Scaffold ID

Ga0114962_10000450 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36519
Total Scaffold Genes	61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (81.97%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

36519

Total Scaffold Genes

61 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (81.97%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F011148	Metagenome / Metatranscriptome	294	Y
F058557	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000045018	F000934	AGG	MPLNTILAVSESVGINDQRFVGQMVSRNQRISTSEILTVQPFGFEMKPMQYLQYSTNRTLLSALREADKATEQYLNFGSTNWVNYIAYQGGLTSAQIGSCLWQTSSANKTLVLGALPSVASTTYIVRTGDFCQVGRYSYIATADVQRGSGTTVNIPVHRNLIATLTSTVQCVIGQYGTTIALGSGTFTGVTFCVILRDYPTYTLVPMTNDSFIAWTGTFKAFEAVL*
Ga0114962_1000045019	F002085	GAGG	MQVIAPVVGTNNIRLADFIRVTTIVAGVTTIYQFSTCPYVITVSAVSATPFNGLSQLVKVGDVQRDIKSTANETSVTLIGLDTALLGWVLGQNLKGSKIEMWHGFFDTNNALITTGGTGGLYKFFTGYINAFSISEQWMEEARQFIGTISVSAASIQIILQNRTAGRYTNDNAWQFFNAGDTSMNRVNFVETINYQFGKDAPAGS*
Ga0114962_1000045024	F000324	AGG	MTTSIPTAHTLVYDGCQTNVFHASIGEGLPHHQHTFSHATICMAGSIVVRKEGKELVMTKVTQPVNLTANEWHEIEALENDTVFVNIFSEGKY*
Ga0114962_1000045025	F011148	GGA	MAVFSKNSITQVSGFDNPCITGELVYQQKTFWNLTLTSEDGVTPVNLTGATVDAQIIRRTLTNVQDTRYGLSFDIGDYTPTPTAIPLTIANRNDTAGSFTLVIDDTSWIAVASDPEMAISSVNGAGFSGRIKISFTATGSTPAEDNIIFLLFIVRSDAIIKV*
Ga0114962_100004509	F058557	N/A	MAISRYEQVSVNNLTFGVNAFGEYTTTTVVWFLGRPLVAEVRNSVAITERYRIYSDLITFKFNYTPNMRMIVDDQNKYSITYRGNEWRITDAIENNDKMSVMLMCYRSDPETKA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114962_10000450

Overview

Ecosystem & Geography

Associated Families

Sequences