NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10000703

Scaffold Ga0114962_10000703


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10000703 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29418
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (23.91%)
Novel Protein Genes15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Associated Families15

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y
F001338Metagenome / Metatranscriptome719Y
F001725Metagenome / Metatranscriptome645Y
F001780Metagenome / Metatranscriptome635Y
F002038Metagenome / Metatranscriptome600Y
F002413Metagenome / Metatranscriptome561Y
F004790Metagenome / Metatranscriptome423Y
F006659Metagenome / Metatranscriptome367Y
F007416Metagenome / Metatranscriptome351Y
F017613Metagenome / Metatranscriptome239Y
F019449Metagenome / Metatranscriptome229Y
F029754Metagenome / Metatranscriptome187N
F037112Metagenome168Y
F074555Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_100007031F001780N/AMIVTTRMSHNRKATVNDLTAPHAEAKSFDSWFFAQPKKVQEKMRESGVLPYREMVQSRWVYNIDPNHPSWSTDRDKTRSMSMDEMNIRTEVDAFISRDHVGVMLKAFMDAISQSDSMPFRRHVELIRWALSLPGCLDSRTIAGMYGRSHIWAQKRARQIRSTVNGDACGLFPHINSRRDKHKSPTHHPRTPHK*
Ga0114962_1000070311F002038AGTAGMPDLPAGIERIAKTVAGQYALLILLDGYPYVEMSARKHADYLSDLGMWKRKTHPSLARSQVRFFTLAPSGEIKELTFNR*
Ga0114962_1000070312F074555N/AMSQPDPFAFFNDAVKAANAQNELLAAQARIKQLEQYLEGMREAGDAIWYCVRHAHTTGPSELIEAVERWQVARNNA*
Ga0114962_1000070314F006659N/AMKKDTKLPTEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPDYTRMSLADIEATIKAGEVTKSAESK*
Ga0114962_1000070323F019449N/AMTLETFTTLIVPGIASLAYASAGFANLYARHYALATMWICYSVANVCLIATVSAKR*
Ga0114962_1000070327F037112N/AMTTYRITYLLGRIDNSKCPPDVLYTLFPAFDGNQAVTASQSEITVTFDTPQTPVDLGPLVRVEVIDTV*
Ga0114962_1000070329F029754N/AMSCNTVTFKRGTNFGSSTVFTPEAAPAIQTLSGVTVTSTIVDADRNEYDLTVVVAGDFLSFTADYSGSTADWAIGTARWDIKFAQGTTIFYSDTMRLDIIGQVTV*
Ga0114962_1000070335F001725GAGMAAISNGTTCIYGIANGTFGNLFVQSYSLSSSFNAEATVVDETGLTKTHRLDDRKSELTVEGIAKTATIPVLGATLSFTLNTASAYPSGSASVSFTGTITKIDDKGQNKGFTSVSITAIDYEGITPA*
Ga0114962_1000070336F001055N/AMGTKSIRHIVESTVATYLSTQTGLTTVTFLTGDNNATQTLPKAVVLCEAARAPSDLPEGEGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLTSIKAAFTATGDATCYDVTMQSEDEGIDERSWATAFSFDILTVFPA*
Ga0114962_1000070339F001298N/AMSLYADFLADAKEMIADFGVAGTANSGAITFQCLISDPAVMTVLEAGGYCERTQYSVRMPAVTASWTLPDGSTGSSAALLSAGVPIASLGQGKKIVTGGKTVRITTQTYKPGSAWITLVVIDDNQ*
Ga0114962_1000070340F017613N/AMANSITAAPSVLAAGVLSALQNKLPVLSGISSVFSARPGSSGMSITVPLIGTSTASTFSTGGYLTGDDATVTQTAVTLAHYKISSRFTPSNLKDYGADFFVNNFVQTASIGLAQKVMDVINAQITNANYSVSTVSGADLSYLELVAVQKTLDDAKAPSPRFAVLNSTYIAGLRSDTTIVGNNVLGAQIIRDGDLGIIAGARVYQFANLATNSENLAGFVAGPDAIAFASALPDSEGIPGFDVSNATDANTGLGVQVLVGMEQSGFMNVTATLLFGCAVGRATSLVRLKTA*
Ga0114962_1000070344F007416GAGMSSGIFLGLTECELLDIKAKALAMIMEGKTLISYSDSGSSASRQMVMPAKEMLSEAMFALSRLDPQTYGRSITTISTSWATRRD*
Ga0114962_100007036F004790N/AMETLTLETLAWARKVGLPPDRVAFLLACPKYTVSKGHRKSDRVITDNPNHHLQRLGDCYWFRLRRRGTDIVENIGHDLLTARKRRDEMLAAFDSGNAIPHVNAK*
Ga0114962_100007037F002413N/AMTDEAPLPMSAPTLVLISGFARAGKDTLATGLLEWSTRAAEHINFADALKEAGNHYMDYLGLDGNFLNEDFKVENRDALVHMGRFARRLDKDVFARHLANWCPVMKHPDSPSPETVVTSDWRYINELRVCQDILWEKGWKVRTVYVSTTGVCPANDEELDSIAEIRASHSFDQEYIFKPNARQQIMNEGRLLAKSWRL*
Ga0114962_100007038F001338N/AMTTENNDRPALTSISTNGTYKLKLIKPKFEKVKVWEDGTCSARLFFVDHNGFCLSKNFSTKYGKALAMLVGKYSSKFTEEIRLDATAAEYLQYLEPACGQTILVGVECEPNGEYNGKPQFKYKMTYPKGSQKPVVKDALPDNPPF*
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