NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10004200

Scaffold Ga0114962_10004200


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10004200 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11498
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004256Metagenome446Y
F029568Metagenome / Metatranscriptome188Y
F043882Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_100042003F004256N/AMNMNYNYYYNNVPGETPSRNNLIYTSLISEDNKIFVQWYYNDTEYHKGQNEVVDPKLMNDKFHRELHFLQNMAWHNPDMVPKIIEVNIPEKKIYLEIDGEDFWNLAKCSIENYDVVLPDWQEQMLAILQAHKDRGWYKYSLHPSSYFVVDGKLKSINYFFTYSSNEGPISIADHSSHIYSARQAIMRKQVEAMGLDWDEPQSLDKLQQLCFESFRSNYPDDFIEQAKRIYD*
Ga0114962_100042007F029568N/AMYRYDLTNTEIKIYYETCPEFESVRELCLQEDNWLRNNYTKESLVLEQHTGYGVVYQKSTGNPMLMAGVFHDVRYPSNVAKMVNRLYTFPDFRTNRSNMVDGFRVADKLIKELIQINCFNIYLVTMQNRPHRGGKRWWDIWCNAMNTASNNMWTVGTGYIQTCPWPVQKCWQNFVYHELLPGKFAEWNPVVINDEEWANMPEGV*
Ga0114962_100042009F043882N/AMGTFYIARPEISYIHVPRTGMAMKKIISDWLKTNFIVIDNEDWMIDHPNLQMVRELIPTGKTMSVVRNPWQRVYSLYRKVSTEGYWLDWNGKTLLDLKPINEWVIDYCNPDLPFEFPRWFNKSTNQVDFLNYNGNWVDFIIKAEEIATEFKPVQEYLECKRPLPDLSGYDHWEFKKYFNDASIKSISKVHERDIDFFKYSIS*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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