NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10004452

Scaffold Ga0114962_10004452


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10004452 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11150
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002977Metagenome / Metatranscriptome516Y
F018716Metagenome / Metatranscriptome233Y
F019762Metagenome / Metatranscriptome228Y
F026556Metagenome / Metatranscriptome197Y
F043403Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_1000445211F026556GGAGGMTSALIKLIFGITLVVIAIAIGPILGIWSLNTLFPVLNIPLTWETWAAFAILFGGSIATRIKK*
Ga0114962_1000445213F019762AGGAGMMELHESVAHTRKEMTVKESEGFRVRMVKHEVLSPKGLFSLDLIQESLKDGEVQDSQSYNFFMTKEELQALAYGLTL*
Ga0114962_1000445214F043403N/AVGYQTSSQLYNSGTSGQFLTSGVGTSTNAIWTTGTNSMPNSEVIRINQTKPATIEVKGTMVINGVDLEERLNTIEKVLQIPERDVILERKHPKLQKLYNDYINALGKYRTFEAIKGDE*
Ga0114962_100044526F002977GAGGMNVQIPAEGIMKTGDWGDSKVYRIACNCHDDTHNHNVWIEADDHDIIVTVYTTGTTNFWSKKRWYHIWTLLTKGYIDTESSVHLNKQQALNYAETLKSAITDVEEFRKAAQ*
Ga0114962_100044529F018716N/AMKTIPNTVTVEWDNQNGFWWNETCAMVLEVFGLPGERYSTHPKHDAMFFNFKNEKDADLCRILLSERLS*
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Institute for Fundamental Biomedical Research
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