NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10008299

Scaffold Ga0114962_10008299


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10008299 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7830
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006985Metagenome / Metatranscriptome360Y
F011142Metagenome / Metatranscriptome294Y
F035668Metagenome / Metatranscriptome171Y
F043286Metagenome156Y
F059759Metagenome / Metatranscriptome133Y
F068428Metagenome124Y
F102815Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_1000829913F059759AGGAMTKQQIWDLLEIYRQMQVANTMAMHSDAFEELHLFIEENCLNVKEEKNA*
Ga0114962_1000829915F035668N/AMTCNKCIEGNCQCARVNSINIFGRDYKAGKSEGQQKEHSRTSEALIELERSGVITNAQMQAILDLILEKLTDALDID*
Ga0114962_1000829919F068428GAGMLEDLALPKRTISCRVRTIKSELNDKDALILEQAVMNPEWPCKTLSNELNKRGTKLSDSAIKHHREKRCSCWKD*
Ga0114962_1000829922F006985N/AMIREVCSCGAEFETDDREAIELIKSWRRTHKHSDKLQKPNERDSSALTNTDVALGFQAIYDPLDDDE*
Ga0114962_100082993F043286GGALQDNQVECRRCGFKWAVNAGKRGRKDLLCISCRVKPAVTIQYGKLRCTPHQGKIDADLNPVNDLGQLIFVGERICGHKDCVNESHILS*
Ga0114962_100082994F011142N/AMAVVKVSGKVSKVFGASDQGLSLVESYKSATGEDYTRTWTVWFAVAHNLAVDSEVTLFGQLSAKIEDFEDKTGKPGRKVKLDINNAQVDKTVAPAVSAPF*
Ga0114962_100082997F102815GAGGMQNSTGEELFLKAIEAYKAWIATGKDFLNHSDLFDVWDDAVTAYGQSVFLERNRAVHQVLQGLEIIK*
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