NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10009751

Scaffold Ga0114962_10009751


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10009751 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7147
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025754Metagenome / Metatranscriptome200Y
F048758Metagenome147Y
F061650Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_1000975112F025754AGAAGMSYFYILPGPFRTGFGITGDHERREKDYTGAWGGVARFSYLFEGTSTHIKRLENIIKIQNRDMLWKVDEWETEWLDNNWTPEQLLEFVQELVAERHLKVVQIR*
Ga0114962_1000975113F048758GGAGMIPAYEDVVRKPNVMKNRNPLKQKTSRIVALADRVAQLQTYKGWQRLIAEYQKQGIQIDPKLRPLIKMVKLKLLFIDEDIQRALDAKHCTSIAGIGNFNPMYLQVFYCVKIPGQEEYHSVDAQHTATLVAALIDAGVFTDETDWREVEMPVLYMETNSKAFARKAFALINGKGKKKISAWYEHRTKVMSARIDQSNDDDDQEALTKQEICEKYDCYPVDKESDFIGLPGTFTHMQALSLDNEILEMACKFHNDYFHYDEINGSLWFMMEDLFKAFKAAKIKITDKFLGELAGILQGYFAGLAGFHEAVHHAHRQWGEHTYGYEVSWQDEAIAAVLVLLYQRLGGTQRIPKPLLDRFEKILDFVADDIKALYEEVETA*
Ga0114962_100097516F061650N/AMTISNYRAVEPLYIVILRNNDKAESLFRAWIKQHRIEHANISGNRMMLHDQRAFEQFRVTWSHRFDSVTVWDTWLKRHIYLD*
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