NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10015801

Scaffold Ga0114962_10015801


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10015801 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5426
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004231Metagenome447Y
F015570Metagenome253Y
F020664Metagenome222Y
F024504Metagenome205N
F029673Metagenome187N
F047564Metagenome149Y
F063332Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_1001580112F020664N/AMPKALPNRPKYDDMHGHLFKLTESERHIIKTIGKGNYAEGVRICIMWGAHFYNLGLTTEMDIRHIGLVTVSSTDNYPHE*
Ga0114962_1001580114F063332GGTGGMTNPNELKEIKAFVRGLIEGIKDTHIDPGLVLNDYWNSWDETLDVNIWIDESDPNIYIATLYRVVNGVTDVETFQRLDYL*
Ga0114962_100158012F024504AGGAGMMDRPTVGITAPYRKSDYTYQDMLLDRIKDLETLVAKLEQRIKVLEAK*
Ga0114962_100158013F015570AGGMNDKLDEAFDLLEFDVTDQIRNMEYLAEQKKISTGVTDGTIQRALVRDLTENLRTLPVSNDPLLIRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS*
Ga0114962_100158014F029673N/AMVQHLRMAACNENTVTGMANAFDLGAEHERDVIASIIFNMVKEQHLAQNIVDTIRVRE*
Ga0114962_100158015F004231AGGAGMSVKPSDFKHEICVYLEGIGECLVCFDILTPGDELDADHSDSYEIDFSVFDEQDKHITYDITKKQYNHCENKAMDEMLDITTAWHKEWETCFD*
Ga0114962_100158019F047564N/AMKPMPTLIDSEKATPCPWLSQLKHYSSQETFLEYLTNHYALIAMNPQTIEIARYRTKELKKDFPTLGILIAQRIKELKNAMP*
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