Scaffold Ga0114962

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10016070 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009151 Open in IMG/M

Scaffold ID

Ga0114962_10016070 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5377
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

5377

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007690	Metagenome	346	Y
F017998	Metagenome	237	Y
F031098	Metagenome / Metatranscriptome	183	N
F037728	Metagenome	167	Y
F038234	Metagenome	166	Y
F038242	Metagenome	166	N
F084228	Metagenome	112	Y
F090305	Metagenome / Metatranscriptome	108	Y
F099298	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100160701	F099298	N/A	MLTITNIEKLYKLNVGNWRIGKVETLDSAYLIQLRKYNSIETKQVNIERTPIGEGDTALYEL
Ga0114962_1001607010	F017998	N/A	MNLERLDLEKYEVLELERDRTLADPLYQQWMSELKVSSSYTDREGIIRANDLNNQYTYSVLAGNKSTKFSVSSILSILK*
Ga0114962_1001607011	F037728	N/A	MEIHSDYFEVGYCSNGKDRYLIGLDTRDVVSFKPLEPKHYKMSIDKVTNEDGNYGIWLWDMGENISYPMSIMPDNISSLSEFTSFLNHTLKLANNGDFSGDTGNRVDN*
Ga0114962_1001607013	F031098	N/A	MKTYYDIAIHTASNDVVNVKGVSYSMMMKIANDNPTLIKVEIVKEYSKKISKY*
Ga0114962_100160702	F038242	N/A	MLTIKNIKELELNFCHQRGLKRIKERTNALGEHFYCFNFGPISDGKGWNKETEVRLGRELQRGGYQIFVMGLQMSTRHFVTIDDIKTKDGLVLAISKVLAQAKWWWENEATK*
Ga0114962_100160705	F007690	N/A	MLTIKNILKLQGQGIWDGWDVTLIYEGNHNDTYIFELHRESAWGNGDCKIMLERTGHKIFGQPGLSYFFIYNSQRTNISASADWLADKDNMIAKLEYILVNKEKL*
Ga0114962_100160707	F090305	N/A	MLTIENIGKLTNTKLGYWTVVEAGVSRPKKWCMSEHYCITLDRAGNGAAILIWRNINPLTKQYHVDVCYEDFTNKIYEGAFSKRVIMDKGHFLANMMGYIKAEHTLRNKK*
Ga0114962_100160708	F084228	N/A	MLTIQNVTKLAGRRIFGGWVVRDMNCHPTQNKYMFDIHCMGPLGNTIDRCTVSLNRIGQLQREMGKPDYMVYFFNYNGEQTDVCVTKDWILNPENFISQLKYIINQYHNKQ*
Ga0114962_100160709	F038234	N/A	MLTIKNIGSLKDTYVGHWKIHYIAKLADTYIIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETGKTKNMPIEDIRNSYTFIRFLIDELI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114962_10016070

Overview

Ecosystem & Geography

Associated Families

Sequences