NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114962_10023782

Scaffold Ga0114962_10023782


Overview

Basic Information
Taxon OID3300009151 Open in IMG/M
Scaffold IDGa0114962_10023782 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4286
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027746Metagenome193Y
F042732Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0114962_100237827F027746GGAGMDYRIYPNSSPEFRMLQKEDGTMVMQVRYINVPMGYTGKWMNVQSEKETVSTERN*
Ga0114962_100237828F042732N/AMSSNYSITRDQIIGLALRKLGVLEIGDTPDANSTANAAMTLNLLIKQFNTDGLKLWKVSELIVPLTNGKTSYTLGGSSSDTMYDALAPTTPITDKPLKVIQGFYRNILSTPYIDTPVLLVSKQEYNVLGSKFSTGTANTIFYDARKLNGLLYVYLTPDLNAQNNIQLHLVAQMPINDINLATEVPDFPNEWMNCLVWNLADQLSMEYGVPMNARQEIGQR
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