NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10000050

Scaffold Ga0114980_10000050


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10000050 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72491
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (70.97%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F001464Metagenome / Metatranscriptome689Y
F008814Metagenome / Metatranscriptome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1000005010F000671AGGLSEKILCYSCNKTKNKLNLKKSSLLPINLFLCQTCIDDKLEPRWVVLIAGRQFGHELVKDFIQKRKYIGAEITASELLI*
Ga0114980_1000005011F000473AGGMVSNVYDNKHFKYGMNQWTGEPNKPVFYTEEMKKRVWELKKPMFLLMDIVKYPDFLALRLYEDNFIQFDGVEKEKVIDYVTKVKKLLESYGVRVELEGKPTN*
Ga0114980_100000504F008814GAGMDKKLTVLEEIIKEIGEELYQKWYNALAVEDRTEEASRAMSVNAGETAIWVIQKFMDKFNKAADELKGE*
Ga0114980_1000005056F001464N/AMVAWCYPDKKRLLYSYSQVLKTMENAYSTSQVAQMLGKHKVTIEDYILDGKIRYPQKVYPIGNPESTWYKFMYSESDIMDIHEFILESGYSNNMPSRNEMRALLKHNTILYTKTTEGNFVPVWKAE*
Ga0114980_1000005072F000258GAGGMANYKLDAMFEIRKFLWNRLTWLGIFNEEEYYSDNLNETLVPIVPVQQQPEMNQFLSGKKHIVYDKIGMSYENNWMICCEQILLTLYSPELIDIVEIRNFLTDEFRRMDESARDVNKWAGLSDKFKFHSIHIADISSTAPSEEIQGFYAADVILEVKYSRITNGQGRFA*
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