 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009152 Open in IMG/M |
| Scaffold ID | Ga0114980_10000254 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37749 |
| Total Scaffold Genes | 91 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 69 (75.82%) |
| Novel Protein Genes | 21 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 18 (85.71%) |
| Associated Families | 21 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000263 | Metagenome / Metatranscriptome | 1424 | Y |
| F000441 | Metagenome / Metatranscriptome | 1136 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F001562 | Metagenome / Metatranscriptome | 670 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| F004840 | Metagenome / Metatranscriptome | 421 | Y |
| F007263 | Metagenome / Metatranscriptome | 354 | Y |
| F011299 | Metagenome / Metatranscriptome | 292 | Y |
| F017133 | Metagenome / Metatranscriptome | 242 | Y |
| F023344 | Metagenome / Metatranscriptome | 210 | Y |
| F030758 | Metagenome / Metatranscriptome | 184 | Y |
| F037095 | Metagenome / Metatranscriptome | 168 | Y |
| F038246 | Metagenome | 166 | Y |
| F043932 | Metagenome / Metatranscriptome | 155 | Y |
| F047059 | Metagenome / Metatranscriptome | 150 | Y |
| F050377 | Metagenome / Metatranscriptome | 145 | Y |
| F051126 | Metagenome / Metatranscriptome | 144 | Y |
| F053291 | Metagenome / Metatranscriptome | 141 | N |
| F060917 | Metagenome / Metatranscriptome | 132 | Y |
| F085700 | Metagenome / Metatranscriptome | 111 | N |
| F087194 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114980_1000025419 | F060917 | AGGA | MIEWLARRIFSWTSLREYIFDEVHLYDHLDTIVNDPEGMKIASCSWMEGDMWYGWNYDSNAKRYYFDDIGNKSLIGLWEDQWLKEADINE* |
| Ga0114980_1000025425 | F038246 | AGGA | MGILDNFEAALEAEEPQKCHYCTKAAKYNDLAEVDTCRYDVVGVCECHSFKGLNS* |
| Ga0114980_1000025429 | F085700 | N/A | VGTLLSWETGKGRVLASFTNVSGQWYNQNERRNSMAKANEFKAAEKLTDYLNNANFSPAVMANVLTTEHTLYTQDRLMELVRYIIQYNSLRLKSEWDKGYTSEGLLLADALNDMLEAKYGAVDRNLTIDSLKETRVRDPKYIMDLDSF* |
| Ga0114980_1000025430 | F050377 | AGGA | MTTSTTTREYLKTQGIAVGKRGRFSAAALGVISKAVQDGVVFSDKKNAK* |
| Ga0114980_1000025432 | F000441 | AGGAGG | MSDKYLNDQLSKAQKLLWGGSETENIEAHNIIAKLIKEKIEQVEL* |
| Ga0114980_1000025434 | F000263 | AGG | MNSEDIGLPPHLQRLVNAGVSGLDIMHGELKNLMLIAEQELADAIEREEESGEAMDSMVRTECEGALDTLVLLYQLTYDLSFAIGARDEA* |
| Ga0114980_1000025435 | F047059 | AGG | MISSRGYGRRVTLTKSSHFIEYMKIHLISLNQDLEDARNNEPLDEDEYWESDSFYMGAIDATEHLLSVATDIMINNERVY* |
| Ga0114980_1000025436 | F053291 | AGGAG | MITSQELIDYIYDDNLIHFDDRDTSDDCDCHIHITLNTMVKYMEAIEC* |
| Ga0114980_1000025437 | F023344 | AGGCGG | MEPFTDTVGEHILGAIQVDIEQHLFEQWNDKNLDEGSDYAEYMFMQFAPDNLKQSYNEYYGYIEGDDFCL* |
| Ga0114980_1000025439 | F001125 | GGCGG | MGDRANFGFRDSKENVLFLYGHWAGYNMLAKLANAVQAAEPRWQDESYATRIAISNLIGEDWTEKTGWGIYINQLGDNEHKVPVIDWANQTFTLYEEDLSTVVFTSSLAAFVDKYSRLVMV* |
| Ga0114980_1000025443 | F003422 | N/A | MTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTQLTCPCGRKTTLVSVEHATITSLNQTKEGNTMDGMTVENLPLSDSEKYNPDLLVTYKVIRGFSDETYETDKVRNIEWELHNARTNSKAVSSLQNKISVVKDIISEAYADSEDQETLQAIAEALEIELVKEIEWSASIEVSGIITVNLLEDTHFDLDSEIEDALYADSHNGNIEVVDQEICNVRENC* |
| Ga0114980_1000025452 | F011299 | GGA | MMTRKDYVAVAEILKFASDKAHPALFSKIVNDFAVMFAKDNERFDVNRFHEASGYHVTKLTSR* |
| Ga0114980_1000025454 | F004840 | GGAG | MYKITIAYDSNTPHWTKPYNDEMEAWKDFFSFTDWGFANEFSTVNIYTPAGKCYTKVFYREGRRVVTK* |
| Ga0114980_1000025456 | F007263 | AGG | MIKEYLDENEFYFIKDQIKIHCDEQQFVHVCKAHGEQMGCYFCEFDYDKKCECEG* |
| Ga0114980_1000025457 | F051126 | AGG | MSAKPYTIVSLLEGKYYRSHSRHDEGVIQYATPRPEIWYGSGFEAYAIEVRSTRGIKNFWATVAVKVGD* |
| Ga0114980_1000025460 | F001562 | GGAG | MGKTQFEKDLEIKESFIDLLNDVYPDVKIGYSTFTAAEILECCDPIAFSIGLIEHEDYLAEMENE* |
| Ga0114980_1000025463 | F017133 | N/A | MSIFTKFATVSDYPKGLMNLCPCGQVVLAPALYHAGQPHWDNPNKCKELWAISQKEITNTPSK* |
| Ga0114980_1000025468 | F087194 | AGG | MTLDEYKQMVEAQRLASLSVALEALTKSDAIAKEMNK* |
| Ga0114980_1000025483 | F037095 | AGGAGG | MAKAKEDLNGDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTSPRDLLMGGFAATAPVILKALNPNEASFGFTKK* |
| Ga0114980_1000025487 | F043932 | AGGA | MAKKFKSLLNLLTLAEDPLVGSSGDVYFNVTSKNIKIYNGAIWVDLTPGSTDPAPFYMHTHSYDGNVHTVNLQQTIDFSDINNNAGVVETSPAIIGIDGGTPTSSYVNASYTQLTLLDGGQIGD* |
| Ga0114980_1000025490 | F030758 | GGA | MATENKNFKVKNGLNVAGTATFGSNVILGETPLRFDTVTNKLQLQINGTWVPIALNSEIPDIASQVSFMDIGLAIDYNGQPIYTVQANGVNPAGTSKFVDGGSPSSTDADVSMVFDSGVIS* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |