Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10000278 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10000278 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36342
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (81.25%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

36342

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (81.25%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001464	Metagenome / Metatranscriptome	689	Y
F013888	Metagenome / Metatranscriptome	267	Y
F071247	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000027814	F001464	AGTAGG	MARGKGQESRKKFLYFFLNNKLHKVIRSSRAKDELVAWCYLDKKRVLYSFHDAEKNMEKAYTMKQAGDILGRHKVTIEEYILQGKISQPQRIYPIGNPESKWYKFMFSESNIVKIHEYILEAGYTKNVPSKAEIRALLKNNLILYTKTEGGYVPVWKAD*
Ga0114980_1000027828	F071247	GGAGG	MGNNNKIPFNETVIKNGRIIRLRKDGSVKADLGPYGKKEKPKK*
Ga0114980_1000027836	F013888	AGAAGG	MATIGVLPASGKASRIGGIPKFCLPISDERSLIQWHVEQMLEMCDEVRISTRSEWVPIIQNMDMNVKIMVREPSTMSDAVKYMVGDYNDTVLVGMPDTYILNAPGNIYKGLFKEDTADIVLGIWECGENLKGRVGQVLVSHDKVIDSEDKVDNCNYPDMWGTMLFRKNMIRYIDTTLDHPGKQLKEWISKGANIKAVRPGGQYMDIGTLRGLKQLYKEME*
Ga0114980_1000027838	F000369	AGAAG	MEIELSDHFDRMNKVVAELLKGNNPTQIASLTGFKRADVVELIDEWKSVVYNDNSSRERAKEAISGADKHYSMLIKEAWKTVEDADTQGQLNVKAGALKLIADIETKRITMLREVGVLDNAEMAAHIAETEYKQDILVKILKEVTATCPKCKMEVAKRLSQISGIVEPIEIIEQANES*
Ga0114980_1000027840	F000376	AGGA	MSEYQERAKECKCCTKHVPLPTVLKEYNNKIVCPTTFSNIIEYQRIWNSIGKRPQGNIRKHFSEYVQQIVEEFFIKEKSETF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10000278

Overview

Ecosystem & Geography

Associated Families

Sequences