NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10000323

Scaffold Ga0114980_10000323


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10000323 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33999
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F047024Metagenome150N
F053808Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1000032316F047024GGAGMTIRKVKKPAIHPKILNDFMVYEGLNDINSVFGALIAFEVYMKSDKFNSYHGGLALQSIRAALCAGTELIEQWTDLEEPTA*
Ga0114980_100003234F053808GAGGMEAFLAALMESFLPAATEAVGGSAMSEAVAGGGMAPPTAMESLGGTIGGMGNQAIAPTMQAYNTMTNPNATAGDMLSGAYKYSFSPQGQQDEQMMSTPQMRMGGGGMANNYVGGIPSLLQGYGGASQGILPYIAGR*
Ga0114980_1000032340F000166AGGMSNIPTPEHAELFAKSVKKWQQVLSLGDWRIEKGMKPAKSAMASVEFTPAARLAVYRLGDFGAEKVTPESLDQTALHELLHVFLHDLMTVAQDPKSSQDEIEMQEHRVINLLEKLLSKDSNGRS*
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