Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10000501 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10000501 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28726
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (4.55%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

28726

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (4.55%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004366	Metagenome / Metatranscriptome	441	Y
F010620	Metagenome	301	Y
F017298	Metagenome / Metatranscriptome	241	Y
F019139	Metagenome / Metatranscriptome	231	Y
F037224	Metagenome	168	Y
F038670	Metagenome	165	N
F061550	Metagenome	131	Y
F074877	Metagenome	119	N
F075858	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000050114	F004366	N/A	MNSLQAITNHIIAFYTAHKQVFKVGTDFKEQLYNFATQDEKYPLVYIVPSGVIPTENTTEFTFDIYCYDIIQKDRTNIITILSDTQQILNDLYIYYMDSNDYSFDVVSVPVFTPLNNDLLDYAAGYQMSITLTVNDWTDCAVPI*
Ga0114980_1000050118	F037224	N/A	MHSDILHKIQVVQAFIHHKTGKQVRIVFNRPERMQQHLALLDQAYMIAMNEFKNTNTK*
Ga0114980_1000050121	F019139	N/A	MKTKNEYLGKYITTYNGNFETSFTVTEETAKDHKYYTSIGLGYLFEEATPKVKYTGVENTKKDKDA*
Ga0114980_1000050125	F075858	N/A	MLINDHSLREYLLEALKTRTRNQIVKEIQGRGEKFHQYNIDRFLQGKDVSLETAKKLDKYIYRIKIYDCNLF*
Ga0114980_1000050133	F061550	N/A	MELELLKSRVILHKTLLKLKASREEIEEKNEHRKDLINSMLETENELSEVLTTFLILEKQAREFSQSAYRLERLNLELKCEIKQLNNELKTNNF*
Ga0114980_1000050137	F017298	N/A	METTENTFTQTTFSLKRKMQWWREQSVEGDKGGSFNLNLYLDYLSEQEFNEIPNSNETL*
Ga0114980_1000050139	F074877	N/A	MTTEQMTATILLYSIELRDEYNQMAGAFGHTDPATQRLQTKYVTLLILIEKLGLDENY*
Ga0114980_1000050143	F010620	N/A	MKKLIVFLSVLTLFNCSSERKAQYHYKKALKHGLKLIQDSDTIRITTIDSIPIIVNDTIVWEKVVTTKDSVIFFKNVYLPKTRFQTRIEYRYKTKVLKQDVLKYKYIYKTEKKQKSKTNWILLVWGFIIGVLLSFITKLLLKLYLPF*
Ga0114980_100005019	F038670	N/A	MITILGKEIPNQLDELTIDQFEVITELSNNKELDAVDRHLQIFGSLGLAESEFYDVDVADFIEYTNQFNTIPEIEYPTISQIELAGYNYTAELKMTVRDTKLIEKIAISKPKGYISDILAIFFKRDDLTPAEHYAEAHLKLKAKLIKELKANIAIPYLLFITNKLIKQVDKVEDVLAEEVE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10000501

Overview

Ecosystem & Geography

Associated Families

Sequences