Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10001092 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10001092 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19473
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (61.22%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

19473

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (61.22%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002515	Metagenome / Metatranscriptome	552	Y
F007263	Metagenome / Metatranscriptome	354	Y
F011487	Metagenome / Metatranscriptome	290	Y
F015600	Metagenome / Metatranscriptome	253	Y
F023106	Metagenome / Metatranscriptome	211	Y
F024789	Metagenome / Metatranscriptome	204	Y
F051126	Metagenome / Metatranscriptome	144	Y
F068817	Metagenome	124	Y
F071231	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000109216	F068817	GAG	VDIDEFMKDPWKRFNEMRNTPHECDYDYRIDSSGTMFFEICRLCLDTKGVIEMND*
Ga0114980_1000109221	F023106	GGA	MRISRRITDEEKVANKLGNTISDLRVDLELVGEYIAKSQPYVVYNRLQVIAESAKETKEGTNYAHNNF*
Ga0114980_1000109225	F015600	AGGA	MDTTQLDPRLQLAVSMGVSGTDILHGELKNLMLEAETEYLEIEKEEREGGYSDAMLSMDRTRAEGRLDAFVEVYNLTYALSFAISDRIKSRG*
Ga0114980_1000109238	F011487	AGGAG	MGNIADEFYDEYYATTCPSCRENAVDEFEDKCTHCLLEEMSATYNEDIALEMSLGLDY*
Ga0114980_1000109239	F002515	N/A	MKKNSEELRRLMELRRSNAASAVPNKKKYNRKKCQSELLQLNKQQKGE*
Ga0114980_100010924	F024789	N/A	MDMSGVQMPKDPKIMTMDWRSLGYWPVYKNGKKVWVPQDEQHNKD*
Ga0114980_1000109244	F007263	AGG	MIKKYIDENEFYFIKDEMRFCCDESQFKYTCKAHGEAMGCYYHEFDYTENCEEQH*
Ga0114980_1000109245	F051126	AGCAGG	MSAKPYTIQDLLVGKHYRSHSRHDEGVIQYATPRPEIWYGSDFEAYAIEVRSTRGIKNFWATVAVKVGA*
Ga0114980_1000109247	F071231	AGGTGG	MMTRKDYVATAEILSNYFVTSVFDEQGEMLFADLVDEFSLMFETDNERFDANRFAIACYKELELV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10001092

Overview

Ecosystem & Geography

Associated Families

Sequences