Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10001160 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10001160 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18885
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (63.41%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

18885

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (63.41%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F001097	Metagenome / Metatranscriptome	780	Y
F001538	Metagenome / Metatranscriptome	674	Y
F001713	Metagenome	648	Y
F001799	Metagenome / Metatranscriptome	632	Y
F002487	Metagenome / Metatranscriptome	554	Y
F014143	Metagenome / Metatranscriptome	265	Y
F026856	Metagenome	196	Y
F056607	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000116017	F002487	N/A	MTKLTRQDAIKDLQGTYCCYCTEPKTYGSCCGENHFVPFEDLYEENKEAMIEEYLSEGNSNGT*
Ga0114980_1000116018	F014143	GGAG	MNTHYLTHVRKMFRTYDAPPQVIRSYQKQWVKSVRQLGDKWLVAKPIERITND*
Ga0114980_1000116025	F001097	GGA	MNHFQWPKNESSRIKPLQGLRSPRVVEAVQEKEIDDWLKQSVALVAGSVRGLGTNQRRVRYFGFEKPHDEVTK*
Ga0114980_1000116028	F001713	AGGA	MKYEFDTTTGEGSVIVTVVMSCERDEEGTYNENIDEVWFEGRNVMGIFTDKQFQELEIEGCMRLSKHILEEADEAKIAAYESE*
Ga0114980_1000116038	F056607	AGG	MATAPVYYTDQLVKEYIDKNFAGKTGAELYNAVADEAAKQGVSAEQIGRVLGFDTAAVNKYATDIGKPLVAEQKALTDVIDYAYNTQFGRDPTAQEAKEAQAYLTGGGTNTNQQNSVRGTGILNQSLEGYNYDTQSIISGYRSTLGRNPTQTEYVSAMATLGYDPFNPTVLGEAGKLSANVAALESDPFAGRYANVNPYGTYDVATQTYKLDGTLPNISQTSQGNSVQFISPVTQRPITTSFVNGKLVVKDGVDTLTGEQAQSAINLALNTGALTATEYKNLTGALASAKSMDDVYKAFGTPQAVAALDPNYGFQLGVGKTLAQAQANSVGVQALVDQAAAANGGRLPANFSVANLAKTANVPFQFGQPTYNKAFTTDTGKTITTLAKSPTVMYNPANPNAPFNFNPANVYQEPVTAGQFRELFPSFGESKRLAQGIINERPSTQSIVNMIQGANVSPTYRPPPTIAAPTGLMDAWKAAETSGNYGDVANMLKGVSVNDLRNYGASPADIQYITSRPEIAGLFPTGTTASTTATPSLNNVLSMIGR*
Ga0114980_100011604	F026856	N/A	MTVIWNNLSEWAGSADSAELRHKIVIAYKDALEREKK*
Ga0114980_1000116040	F001799	N/A	MNDKAVLAQWAKNLLNDDFFKEVLNNLKNEQISVIINTSAEECDRREDAYRHIKTIELITGHLEGLASETVIREKKWKIL*
Ga0114980_100011605	F001538	GGA	MIDTIKLFPTVQPSGYPDRHDLAQVKLEKQHEVNKANELAKQKKTQLQDIGFEIYTKKVVQERLRMEIFQNRKLDIYV*
Ga0114980_100011609	F000166	AGG	MPNIPTPEHAELFAQSVRKWQQVLSLGDWRIEKGIKPAKAAMASVEFTPAARLAVYRLGDFGAEKITPESIDQTALHELLHVFLHDLMTVAQDPKSSQDEIEMQEHRVINLLEKLLSKDSYGKQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10001160

Overview

Ecosystem & Geography

Associated Families

Sequences