NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10001830

Scaffold Ga0114980_10001830


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10001830 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15165
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (94.59%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001059Metagenome / Metatranscriptome790Y
F001915Metagenome / Metatranscriptome617Y
F015330Metagenome / Metatranscriptome255Y
F020513Metagenome223Y
F034802Metagenome173Y
F074585Metagenome119Y
F078405Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_100018301F020513AGGAMLDKQNIIVESLESPPANKGLEYQVAHEAYLKMVDYLRLTQAKNTLNRLSDYHYLNIPVSNSTEPIRGIDYISPVVSPGIDYSTDVITKCLMPDGKVNFEFERISEADAIASQQAEKMVTYFINSKNDSYQIIRDLAQDSLLHKNGVVMISPIREPITQYKEVEGTRDNLRSFEIMAAEKGLVAKRQQMRRIDVDLQGVAQETMMPDEQGQEPTADDMQEAIRNNTIYRAKYKLTGFSTNIRIKHVAQHYFVCNPTIPGIQNQDFCGFYMPMTIHEAKSQYPYIDLEKFADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVVMLTTAWLRKDVDNDGEEEIVEVCYSGSYVLYIKEVDFIPMASMCPKPIVGNFFGYSQAERLVPLQEYKTAINRAEIAFALQASTPRMGVNPEFIDAEEIQRGVSALFILDRKFDPAKHVFEFQPLQGNLAYIQDSMERFEKDNNRMLGMTSAADTLNPEVMKDGNSGYKLQLAMGPNQIIQDAMVKNCAIGLRDIIYIVWKTMIQ
Ga0114980_1000183010F001915AGGAMEWSLADPRFDVDDIVEMADSFFGHEADGIVTRSRAVFRHRVTVACTEQLFNKSREFIAVCRDEPKTLPMYDMNGMVMGSHSVQPLLGFCWFDRGGYTTYSNEEISNAKFHHLDLSLSVRNRVRLVNEMIDQHILWAHTWGVPIVCSTSIRSEHDGFMRIHAKRGFTVNGSYAWIRTEKGMECLTKK*
Ga0114980_1000183014F078405AGGMRQYEFEISNRRTKRIEHARATARTAAIARAQIVLMYGAQFDVMTLCSDINPPHHTLGEIDCSGFIETESAWLFDQANQIEKDKTCKTA*
Ga0114980_1000183015F074585AGGMKTQKEVRAAFWATFPNLSKKRHRYSWNQNDKTAELVYSIDTRCAFVDFVDQLQSDGEISEALANRVTL*
Ga0114980_1000183028F034802AGGAMTKSQAHELLDRQREQRNVTALPSAIDHALFLTGDLGGNALVFSEGMDSTIQQEDQGSWQSKGHDVVAGTGRYYGSEEWFRANHGPKAEDE*
Ga0114980_100018304F001059AGGAMATYDIEALKADLPTAKDLAQFVYDKTQIALDLVGKSKDDQYQVAKNALEGKKIPSEFVTEENPYVDKKDLIPVDELKVLPPRNKDLPEPDTQVHYFGATNMPHPLDPQSDKKVAIDFRKYENGLITYQVVAPVEQIAVGSRINKYGQTVPEKYTWLDPRTEELLMRRADGTFTERGRGLYTYLIGEKGGGVWTLIDRDMVSVSAKNIADPWA*
Ga0114980_100018309F015330AGGAMSDEKVVELKTKNAVGRPKSVVNRVTEYGALFNQLNAAHIAKGLPPLKTAMEVLIEAMQSDELDIKDKARIADKLAPFESSRAPVISIEHVQNIVREEEVSADDAMDDFLDSLRKV*

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