Basic Information | |
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Taxon OID | 3300009152 Open in IMG/M |
Scaffold ID | Ga0114980_10002406 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13204 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (63.16%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007911 | Metagenome / Metatranscriptome | 342 | N |
F015449 | Metagenome / Metatranscriptome | 254 | Y |
F024499 | Metagenome / Metatranscriptome | 205 | N |
F044969 | Metagenome | 153 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114980_1000240611 | F044969 | GGAG | MSASLTVNPIKLQQAFKAFTGNMKIEAAKEMRIQARSLCVSLANSTQPFGLNPKAKAIGEKAVTRDIDRVYKSTLTAVREIGSLPLGRGKTATQNAKQAAAALAALVLGKSFNKGKKGVAAKSEAQALIDRLNYKPYVYTKIGDFDKGSAHENARFGKSRRVPKNQFVRQVVTKETELARYFKQKRGNVGIAKSGWAVCAGILGGFRGIPKWVYRHTGGGRVEDRSLTKAGAFSKPYISMTNTIPWISNVISKSTVQKSIDIQVVKMIKRLSIIAAYQSKKAGL* |
Ga0114980_100024062 | F024499 | N/A | MSEFTECLKESLAALYDQTGTAATIGSSSVTGILSTITRKESVELGGFDLDLNSTFTVDVANLATAPTIGSILLANSVSYRVASIDTSVGSYVLGLREV* |
Ga0114980_100024066 | F007911 | GGAG | MPAVTMLDRLIEAAFQELLTTTVTGVTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTVDAHTQKCSKVLQAFYDSSPLATRLNATTAIGSARCFNAKLESVEPEADDEERSMRRTYKLAVIAYPNSIAS* |
Ga0114980_100024068 | F015449 | GAG | MVDSFWGTTNIKVAAAASAFGAKLRPMDPVTCIVKEDGHRQFTFWFTISEGDEAKAEMERTWAEMKSDGESPIRYVRAALENRETLLGLMKRAEPIISIQRGGQTLLVSERASPELKRAMLKKL* |
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