Scaffold Ga0114980_10004743

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114980_10004743

Scaffold Ga0114980_10004743

Overview

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10004743 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9122
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (52.63%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013889	Metagenome / Metatranscriptome	267	Y
F025022	Metagenome / Metatranscriptome	203	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000474318	F025022	GAG	MELIVTAVKRTDGLYHFNHSHNDTVEELLMNGTEEVIDEHFYFFTHRFPVTGDQIQITLSEEEIKDYDTLLLKEVEDEEGTTYTDTTLCSPVWLCPWLEGYFGHRPNELYIKLKPINKGLEAFSKNTGMYK*
Ga0114980_100047434	F013889	GGAGG	MSRTHRNLEGMHMGALRFPQTTKEIRQLDAIVNDPELKDYPVSGLNHMKSREHNLSTSWADQVVSGYYQEDYND*

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