Basic Information | |
---|---|
Taxon OID | 3300009152 Open in IMG/M |
Scaffold ID | Ga0114980_10006381 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 7763 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001915 | Metagenome / Metatranscriptome | 617 | Y |
F044446 | Metagenome / Metatranscriptome | 154 | Y |
F098944 | Metagenome | 103 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114980_1000638113 | F001915 | AGGA | MEWTLAHPLHDVDDIVSMADSVFGSEADGILTRDKAVFRRHVTVATTVQLFDKNKEFIAVCRGDKLVRTFIGDAAEDTLLAYCWFDRGGYTTYSNEEISNAKFHHVDLSLSPRLRVRLINEMIDQHILWANRWDIPVVCSTSIRAEHDGFMKIHKKRGFTVNGSYAWIRTEKGIECLTK* |
Ga0114980_1000638114 | F098944 | AGG | MFNEIRPEGSTVTSEEIKQRARDYAKARRAEKKAMKLATGKIEPKEAIETVPVVDEFDMTAFTPRSQVKAGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNEFMESLRKV* |
Ga0114980_1000638118 | F044446 | AGGA | MATYDIDSLKADLPTAKELAQFVYDKVNVSLDLVGKNKEEQYTVAKNALEGKKIPSEYLTEENPYVDKKDQIPADPIRKLPKRDIDLPDEDSLVHFFGATNMPHPLDPQSDK |
⦗Top⦘ |