Basic Information | |
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Taxon OID | 3300009152 Open in IMG/M |
Scaffold ID | Ga0114980_10013132 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5271 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F054028 | Metagenome | 140 | Y |
F061843 | Metagenome | 131 | N |
F077222 | Metagenome | 117 | Y |
F093846 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114980_1001313211 | F077222 | AGGA | VKILWIVLTVLAAVGKGRRVMPWAILAYFGGWVALGVVCLTRQRPLRPVPPWMLNLGYQSQAKRAFARIDTPKDLLG* |
Ga0114980_1001313212 | F054028 | AGGAGG | MKLVATTETVKIQWFAIMHDGSKIRNNKGFIHNAWDVKCSCGWESKTGGAIKACVARIADQHKWDAHDYSWKAGN* |
Ga0114980_100131324 | F061843 | AGG | MSDETWSDIFKIFITNDGSYHLYLEEQEACVDLIENVTDEIEVTDFAEMKKASAADLRDDFATMRLDSIRKNMPPMALKIATLTERELLDLAQEIIQVVQNKNKIRLEIVK* |
Ga0114980_100131325 | F093846 | AGGGGG | VEIGIVLVAAVLALAGTSLATILTNGTDDWAGQVKRAEKSRAKIKKALGK* |
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