NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10027785

Scaffold Ga0114980_10027785


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10027785 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3506
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054608Metagenome139N
F074376Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0114980_100277853F054608GAGGLDIHLLKPARAWAQLATDFALGCEQVLAGDDGRGEWTTYQYRTAHPILRWLPTKLAEWIGDNYGPDLGIAPKGNVDGWTVGELNTILENNLVPGAKGHLRTFGCIEWESAVFNGRQKARCYPFDLPKHRFRGKNLQVLQYSYMNSYHNSYMNSGLCLFGRPSSLQSQRPRDL*
Ga0114980_100277855F074376AGGMHILITFDYTTHYQVQAMERKIKHKLRPQNAFGLAKDLDVPASCPREELHQFLIGVYGEYILPSSVYRFNQVLRAPELYLSPTKPLVSDQMLRGVWTRLRDRLSSLDSDSSMLQVTPAYAAHFIDMYVDKHTGKHLTGDRIRVLLLTLPFLLRDLIAPEVERDCYTFPLCIHTCIHI*
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