NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10028507

Scaffold Ga0114980_10028507


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10028507 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3457
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001055Metagenome / Metatranscriptome791Y
F001298Metagenome / Metatranscriptome727Y
F017613Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_100285072F017613N/AMSNSITAAPSVLAAGVLSALQNKLPVLSGISSVFSARPGASGMSITVPLIGTSTASTFSSGGYLTGDDATVTQTAVTLAHYKISSRFTPSNLKDYGADFFVNNFVQTASIGLAQKVMDVINAQITNANYSVSTVSGADLSYAELVAVQKTLDDAKAPSPRFAVLNSAYIAGLRSDTTIVGNNVLGASIIRDGDLGVIAGARVYQFANLATNSENLAGFVAGPDAIAFASALPDSEGIPGFDVSNATDAGTGLGVQVLVGMEQSGFMNVTATLLFGCAVGRATSLVRLKTA*
Ga0114980_100285073F001298N/AMSLYADFLADAKEMIADFGVAGTANSGVITFQCLISDPAVMTVLEAGGYCERTQYSVRMPAVTASWTLPDGSNGSSAALLSAGVPIASLGQGKKIVAGGKTVRITTQTYKPASAWITLVVIDDNQ*
Ga0114980_100285075F001055N/AMGTASIRHIVEATVATYLSTQTGLTTVTFLTGDSAATQTLPKAVVLCESARAPSDLPEGEGNFSCSVRITLFSNADDTTLADHRLRCAALSGNMRDLVSIKAAFTATGDASCYDVTMQSEDEGIDERSWATSFTFDILTVFPA*
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