NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114980_10042931

Scaffold Ga0114980_10042931


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10042931 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2762
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F000868Metagenome / Metatranscriptome853Y
F047650Metagenome / Metatranscriptome149Y
F071228Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0114980_100429312F071228AGGAMEDTYGATVTPAVPATYNPSALVQYKFIEGENVTYPIAKVTDLEWDLEQGRRSRDNFNELKGTVNELEELLVELYNPNYTKEEALQQIAELFGFELSKTVTITGTINFEVIMQVPLDEVEDFDAHYKLGDELSLTSYNGDVEVNDWSIESTDVDWN*
Ga0114980_100429313F000311GGAMYFELTAPDRLSMERAYWDAQIIGLDPSAMSPLTFNIGTGSIEKVSKIRDKYNLIESYVSDYEPTGYTGR*
Ga0114980_100429315F047650AGGMAEDVSPVYYCDSCSVARASYLIKLLDGELAFCRHHYNKSKKALDEKAYEVVELNKTEESPKLTEMAE*
Ga0114980_100429316F000450GGCGGMGDRANFGFVQPNGQTIVLYGHWAGHQMLGKLADAVIAARPRWNDSSYATRIAISNIIADQWNMETGWGLYVNEIGDNEHKIAIIDWDQQTFSLHEHTDARDPLNKVRGMNNKALFTMDLTSFCEKYALERLLVV*
Ga0114980_100429317F000868AGGAMSFLENENQMVIDAEYSYIGEQLVEDWTNSNLDEGQLFADFRFAEMCESNYLKGRFNLFYDLKPEDQYYVEWDEEA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.