NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0114980_10047619

Scaffold Ga0114980_10047619


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10047619 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2607
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031492Metagenome182Y
F047047Metagenome150N
F049615Metagenome / Metatranscriptome146N
F057369Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0114980_100476193F049615AGGAGMTPDTVNLIAELEQRVSELSAALELVTEDRDNLRDAGNSLMTELEACRATLVQAHSDISRLRVYLAQGAEL*
Ga0114980_100476195F031492GGAMSQYNKGDKVIIDDESGVIESVSVGAEGTLYDVRYGHTFMIAVDVPEEDIQPWQADEQ*
Ga0114980_100476196F057369N/AVIEVLKMMIEDPVAEFIEAAADGLCTAYVVVATVERIDGSQSFWITTLNRQTSSTTLGLLVSATSAEQYRIAKSLTEGT*
Ga0114980_100476198F047047AGGAGGMATQPKQHRYPAINLLNTFTPGTNDQQIGDMLGISRSCVVRWRTVGKTLYEYQADTYAVKLGFHPAEIWHNWLDDAMSIA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.