NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10079503

Scaffold Ga0114980_10079503


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10079503 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1967
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → unclassified Saccharopolyspora → Saccharopolyspora sp. K220(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040536Metagenome161N
F041090Metagenome160Y
F055552Metagenome138Y
F090097Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0114980_100795031F055552N/AQEYWQRKADLCQKIGIEQLMAGDIKNGTRNLKRMVRAMEEVNLIKANEGEDKSAADMWASLIASGVMLAGEGESNE*
Ga0114980_100795033F040536AGGAMDELGKVIRFHPVKSPLSLFYEVIEPDGETRWGGERVFDALSWLHLAPKGSRLLVSGWESDDLDAQPVGQPLDVTEMYQLLKGVN*
Ga0114980_100795035F090097GAGGMTIRSKRVSGKQAIHYRNYRRVRDRALARLSQAYPETYKELLELEKVSDDTTGAKWVDIDGTTSLVVGVRSGNREEAVIIESAGYIAEGEGDNE*
Ga0114980_100795036F041090AGAAGGVRSETTSVSQTNIVKLSVIRSERQRASSPFGPVKAGLTTSQRTDRDQALTELLSSLENVVADLNSKSYTALDTLAIAIQGARVALSATTTDEVGTNLI*
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