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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009152 Open in IMG/M |
| Scaffold ID | Ga0114980_10101614 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1719 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Simoncouche, Canada | |||||||
| Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002009 | Metagenome / Metatranscriptome | 604 | Y |
| F003304 | Metagenome | 494 | N |
| F007747 | Metagenome / Metatranscriptome | 345 | Y |
| F010983 | Metagenome / Metatranscriptome | 296 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114980_101016141 | F003304 | GGAG | MKKGLVTQAFGDDWKKILELTQPRMEAYCKRHKIDFMALEKPLVEPVQYSKSAIGNIMATKGYEQITFVDCDILIANDCDEIGSEVEMFSAFDEGAFLDRKYEMGKLASAFGARIDPRFYVNTGVFVISSKAVGVLSMPPLGLLPNHFAEQTWMNIMIHLWNVPIDNLDPAYNCMTSVESHF |
| Ga0114980_101016142 | F007747 | N/A | MKLGVIQFGKSRPAPKAVIVDVTFDDKTKIALFRTGLRLLKFDKEAVIEYVIKKSLEYKLKK* |
| Ga0114980_101016144 | F002009 | AGGAG | MTAPTIQEMGNAAQEIVWRVMGKGSDKSGYGDWLEKDRPTHDYHIARAIRHLATAQMQLHKSSPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL* |
| Ga0114980_101016145 | F010983 | N/A | ENILLGRACSTDEVLKPYIETFREWASKNVEKTYWCEKGLVGAGYAGRCDAYVKLRSIGDAIIDLKNRKVNPKYDPFYDTDCAQLWAYRAASENPKCACVSVVLASNDATKLTTKVWDEDELYQAGIAFCAMQKVWSWVKGYIPPGMKL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |