Scaffold Ga0114963

Basic Information
Taxon OID	3300009154 Open in IMG/M
Scaffold ID	Ga0114963_10000010 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	115658
Total Scaffold Genes	181 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	130 (71.82%)
Novel Protein Genes	32 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	22 (68.75%)
Associated Families	32

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F000980	Metagenome / Metatranscriptome	814	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001280	Metagenome / Metatranscriptome	732	Y
F001460	Metagenome / Metatranscriptome	690	Y
F002501	Metagenome / Metatranscriptome	553	Y
F003379	Metagenome / Metatranscriptome	490	Y
F003408	Metagenome / Metatranscriptome	488	Y
F005741	Metagenome / Metatranscriptome	391	Y
F006841	Metagenome / Metatranscriptome	363	Y
F006846	Metagenome / Metatranscriptome	363	Y
F008245	Metagenome / Metatranscriptome	336	N
F009961	Metagenome / Metatranscriptome	310	Y
F011299	Metagenome / Metatranscriptome	292	Y
F011394	Metagenome / Metatranscriptome	291	Y
F012456	Metagenome / Metatranscriptome	280	Y
F014140	Metagenome / Metatranscriptome	265	Y
F021988	Metagenome / Metatranscriptome	216	Y
F023341	Metagenome / Metatranscriptome	210	Y
F031497	Metagenome / Metatranscriptome	182	Y
F042904	Metagenome / Metatranscriptome	157	Y
F066776	Metagenome / Metatranscriptome	126	Y
F070122	Metagenome	123	N
F072349	Metagenome / Metatranscriptome	121	Y
F074872	Metagenome / Metatranscriptome	119	Y
F099281	Metagenome / Metatranscriptome	103	N
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_10000010111	F011299	GGA	MMTRKHFEATAEILKFMSDKIHPAVFSKTVNDFAVMFANENPNFDVNKFHEASGYHVPNFSSR*
Ga0114963_10000010114	F074872	N/A	MLYYNPKQKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNSSGSVRVLLEMPTKETRWTTVSNASLV*
Ga0114963_10000010116	F005741	AGG	MARFRVEIYDANKANDVTIYSEQGVDKEHLTELVFSNIRRFSGKVNAYVFDMQKKKKTTAMFLNEDTVAKINS*
Ga0114963_10000010119	F000980	N/A	MTTWNKYTHVCHTCDALIEYTSTRDVINVTCECGGNTAYLSVEDATISPSNQTKEEKMEETTTPAVTVPDTYNANLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKRVTTLLSNIDAAKEIICEAYEDSEDKDTLRAIAEALGIELIKEVLFTATLEVSGTYTYNILENDYELDLESEVYDALYADSNNGNIEINDTEVCNVREA*
Ga0114963_10000010120	F000311	GAG	MYFELTAPDRLSLEMAYWDAQIMGLDPEFMPPLTFNIGTGSIEKVSRIRDKYNLKESYWSDKEATGY*
Ga0114963_10000010123	F001125	AGGCGG	MGDRANFGFRQSNENVVFLYGHWAGHRMLENLADCVLKAKPRWNDEAYATRICISNLIGDEWSSETGWGITVNELSDNEHKVPIIDWKNKTFTLMEEDLQTVVFSTSLEAFVDKYSSQLSMV*
Ga0114963_10000010126	F001460	GAGG	MLGYTESDLNKMINAVHDAKLFYLRTPSDLMDKTELRNDLEMAVSFMQGLWAEGYFE*
Ga0114963_10000010128	F000263	N/A	MIMNNEDIGLPPHLQRLVNYGVSGLDIMHGELKNLMLIAEQQLASAIETEEESEEAMDSMERTRCEGALDTLADIYNLTYQLSFAIGERTL*
Ga0114963_10000010130	F000441	GAGG	MSDQYINDQLNTAQKLLWGGSETENIEAHNIIAKLIKDRMELSDQN*
Ga0114963_10000010131	F000852	GGA	MATKREYLKAQGITVGVRGRFSGAAKVALAEAEKAGVVFTKEVTNKAK*
Ga0114963_10000010132	F031497	AGGCGG	MSKSPEIKVAESLVNLMDDHWFNPTVFGRYLAEQPLYTIDRVMEMIVSVISEQAKLYNVYSNRGESTEGLSLANELNECIKSYQQDNNLNNLKLPSRSYTVKKREEPKATYKFGWRSEELDPFN*
Ga0114963_10000010148	F006846	AGGA	MIYNIVEKYLMRPKRLREAIQAVVRDNDELLRMIKEAENEEPTNLTWSEGDKWYGWTYNSNAKRYYFDDIGNESLMGLWEDQWKREEA*
Ga0114963_1000001015	F000376	AGGA	MSEYQEKAKECKCCSKHVPLPTVLREYSGIVVCPTTFANIVEYKRIWESYGQRPMGSIRKHFSEYVQQIVEKEFVK*
Ga0114963_10000010156	F021988	N/A	MSNNIKKEDGTGMVPPANAGAPAGAVTSTQTPKRYPRQGVKIDTNKHGIRRETSLIPKPVKKTGRKKI*
Ga0114963_10000010157	F001280	GAG	MCMDCGCGINSVGMGSGMTPVTIEDVSRDGESGTTLGMVSTPEETRQFINEQ*
Ga0114963_10000010166	F042904	N/A	MAEQTVLEGIIEDVATELYNKWSAALPEDERNQQAFSAMSKNAHETTLFVIQNFMNKFNDAAEQLKGE*
Ga0114963_10000010171	F105192	N/A	MKINLYQILITLAASGISGIVTALYADRKSKKERAQMAADKARDNMLLEIKDLQIKLYQLEKDLSEWKEKYYEAIQELIKVKTELEKTVIKLSHAEIHLKED*
Ga0114963_10000010172	F072349	AGGAGG	MDKVLCYSCNKSKNQLEAKKSSLLAVNLLLCQTCTDNKFEPRWIIILAGRQYGPEHVKEHIAKKRYVGTDITASELLI*
Ga0114963_10000010173	F011394	GAG	MFIDKNKDHFKYGINEWTGEPNKPVFYNKDMAKKIREIKKPTPTLEMDIVKYPEFLAIRLYENNFAQYDGSMRVRVIEYVEMVKNILESYGVRVELEGKPGGKNHG*
Ga0114963_10000010175	F066776	AGG	VLNLTEKGVEVFIKRFQSKIQESFWNNYDLVIWKKDNGGYTDTKGMYRKDAWGKSEKISVDQKGIWKLPKKYVKYFK*
Ga0114963_10000010178	F014140	N/A	MNKYRIKLDVEVEVEAFNTEDASEYIHDIFNIDDEIKKVNIVKITNK*
Ga0114963_1000001018	F000369	N/A	MTELEPAVHFDRMNKVVQELLKGNSATQIATLTGFSRKEVLEYVDEWKSVVHNDQNMRDRAREAISGADEHYAMLIKEAWKTVEDADTQGQLNVKAGALKLIADIETKRIAMLQSVGVLENSQLASQIAETERKQELLVGILKEVTAGCPKCKMEVAKRLSQITGIVESIKIEDAEVITNVQ*
Ga0114963_100000102	F023341	AGGA	MPVYEYKCSYDDAHPTMSTHRSIMDEDPGYTCVECDSVMTRHFTPFGIQFKGNGFYKTDNVK*
Ga0114963_1000001025	F008245	AGGA	MTEDKNTLQLISDITEFNDLHEYMQDEHLDKALAIVVKILMNPEVPSAKAPMLIMELQAMSTKFAVMASVYSTIAKDKSGTVNNNKKNVYYSVKESIDKLVDALKYVVRYN*
Ga0114963_1000001041	F002501	N/A	MWCGKCGGRVFVDRVFSQKLHMELFCIMCGKRWMCNKETSAFGKWLDQKETANQKTYGISS*
Ga0114963_1000001051	F003408	AGAAG	MPELIQTFKSMQKTESEKRKFLASIQGVDLNENSNQNEEGSSFEDVRRRALGINASADDVVSLQGSFASEAGFGIGAGLGYSIE*
Ga0114963_1000001052	F006841	AGGAGG	LATTVYDVEEIQLQNGATVKLKPLTIKELREFMKVIQRTQEVTSEDETLTILIEACGVALKKQLPDLVADKDAFEDTLDVPTINRILEVCGGIKMDDPNQLAAAVLAGQN*
Ga0114963_1000001054	F009961	GGAGG	MTVDYKIDAMFELRKFLWKELKATGIFDKNDYYSDNLNAEIIPIIPVQQSPELDQFLNGKKHIVYDKIGLSFEDIWLLACEKVLFTIYSTDITDIYEIRNLMMDLFRRMDESARDVNNSSDSTKLIFHSIHVVETSPIEPSSELKGFLSADVILEVKYSRTTDGRGRFD*
Ga0114963_1000001055	F012456	GGA	LDSSVALIQTASGLERLMAGSVPGVLKDSTVAQVSAFLYYEASVLSKLTTNDAFKKLFKTTVFNQIEKDFSEYLDSQARIKQKSLQHVYEWNKAGNPAARLFKLNRLDTEGLSFRINYDFKLSKSTVPSTNKLQKKKYVFANKASIMESGMPVVIRPRSAERLVFELDGETVFMPKGTSVTVKRPGGTASTNQFALAYGRFFGGPLVNSSIKSSGLQRIFNSKMAATLDVPMNIKKVQYIFSPGKIRLQADAALERSFGGSL*
Ga0114963_1000001056	F070122	N/A	MSSIVDSLMPMEADIYVQEDEQDPDTGAIKKNWNYSRTIACSAKGIISNSGTARSGDKQNFSNRYANEQTIEIRTNLQINYREKISNIRDIQGNVIWKELNYPTETPTVFEVFSSTPITDPFGNILAYNSIAKRSENQEIGL*
Ga0114963_1000001075	F099281	GGA	MATVDKNFKVKNGLNVTGAATFNAAVNVDNLVLNSTPIAYNSSTGRLQIQIGGVWKDIAFLSDAAEDTNAVTFMDIGLAIDYDGQPIYTVYANGVNTTGTKFANGGDYSTETYSMTFDSGTIN*
Ga0114963_1000001096	F003379	AGGA	MKKIWALVSTIAIAILSGVALSKFLNWAGQKEIFDFDLDEDIDNEDF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114963_10000010

Overview

Ecosystem & Geography

Associated Families

Sequences