NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114963_10000057

Scaffold Ga0114963_10000057


Overview

Basic Information
Taxon OID3300009154 Open in IMG/M
Scaffold IDGa0114963_10000057 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63481
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (32.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017268Metagenome / Metatranscriptome241Y
F038565Metagenome / Metatranscriptome165Y
F039478Metagenome / Metatranscriptome163Y
F043788Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0114963_1000005714F043788AGGTGGMGSFDDVYDMMQKMEDNNIEYLLITITKGKKQGKADVFYSLKDKSSMRILSQGLKAFNKEIDKIDEEGLEGDKDE*
Ga0114963_1000005723F038565N/AVTNKKKFNFPESLLKQIDECSFGGYVLFNFSSKGDPQVYTKFDNQINAMALLYYINTWSQSIDQLNLEATTDLIARKNEEEDEE*
Ga0114963_1000005748F017268N/AVNLDITLLFNLVLGALSFLGGWLFTRVFSLFDKQEALFKEINDKTFSDFITLRKEMELESRKHQQEISDLALKISTTYVTKESFEAYFDRIEAKLDRNFDIIQNHLTKK*
Ga0114963_1000005766F039478N/AMLKKILEFIDGVFEEEKEQPVLGTLYKIKGEVLPFRYIRFTNEVYSNKPVYHFKHHQLKEYKFNDLSKVERKANKEEVRIYNLIKEHVNEVAGNS*
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