Scaffold Ga0114963_10314359

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0114963_10314359

Scaffold Ga0114963_10314359

Overview

Basic Information
Taxon OID	3300009154 Open in IMG/M
Scaffold ID	Ga0114963_10314359 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	869
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005737	Metagenome	391	Y
F010821	Metagenome	298	Y
F030055	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_103143591	F010821	N/A	MTDFTFSPADFNATTILVVANTLDAKQYLAERYGLGCVSVEIRKSAAPEFADSFEFQGLSYA*
Ga0114963_103143592	F030055	AGGA	MRHIELLPATDARIMIDQGLEHLVVEHDDLIVPLDCYFCPITGNLWHAYLGTTELYNVLSATVIASLEREFAPLCA*
Ga0114963_103143593	F005737	AGGA	MFDIEKYTKPTDWFQVALWIVSAAAIVVVILDVLYWRA*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.