NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10000183

Scaffold Ga0114968_10000183


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10000183 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46743
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (26.92%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Associated Families14

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014513Metagenome262Y
F015061Metagenome / Metatranscriptome257Y
F017989Metagenome237Y
F021128Metagenome220N
F023326Metagenome210Y
F025268Metagenome / Metatranscriptome202N
F027487Metagenome / Metatranscriptome194N
F040160Metagenome162N
F056542Metagenome / Metatranscriptome137Y
F058252Metagenome135N
F061533Metagenome131N
F075040Metagenome119Y
F089880Metagenome108N
F097170Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1000018311F025268N/AMSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCAPFRTITDTYCETDSCDSKPEVIQRPGTESYVFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTDDGTYCGLVDDGAWYVPEHTLNNEAGYDLCALRVKLAPADLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIIIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNADTAFNASLGAFNEADPATWARLVRVPRYIKTVLENGCAYIPNRAYRTADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHSFLHRLPQSKNLYGSCCPVQSYIVPENNQDCYSCAGVGDIVVPS*
Ga0114968_1000018313F027487N/AMACFTDLDYRNKSYPFVQTIAAAAGIDSISYGCYDAASDASKLYQFYVGLATIGELTPVTENCFVQKTEDQQYFLTNEALAAALPPVG*
Ga0114968_1000018314F017989N/AMALTQPCFISLTPDQQNFNIYEQLKQVTGFDIPPYDEIDITYYGATNNIATVLYKNAGVLVATLTLEYATQPPTVNDTNLVKITITYP*
Ga0114968_1000018326F097170N/AMPAEGSVFDGFTSVIAQDAATHPSYLPEMYVAESVNRTFRGGINRTRPSIRNINIVAGTGQPETIVNDIQTGNFQGAYPYRRTTYESADGIVISVAGVIYFLKIVNNVAYAYKLPVADGWTWNDGSLMHTFFVQAEDQLYIQNGYQNAIAWNGDLNTNAVRLNPFNREMPIGTIMEYAFGRVFVSDKFNQIYASDIIFGAGLTDTENTRRFTEITYWQLGGAFATPSMMGNITGMKVMPEIGINLRGQGQLVVLTGNGAFSMDVSIPRDQWNTTNLQRISLLGRGCTSPYLALVNSELWFRSHDGWAFYSNTQSEFNRYFSLRKLSREVNKWVERDTPWLRQFASSMFFDNYILSTVAPEITRTTAPGLHRYHRGIIALDLDQSASPSPDAQLSFRWNGLWTGVRPTQMVSALIVGQKRGFAFSFDKDNKNRLYEVTSEQTDDYGPNGVRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVESYAQFRADSNPCWSELKVPTKFGCNPCSPIAIECVPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKIKLTGSATIDRVRLMANIKNNDDSPIGDCPEENQECEPFLCCQEKYWDYNIVN*
Ga0114968_1000018328F056542N/AMTPLKGTDPRLVSGGAPTRGKITTMMGNSNPPNTGKNPYSSAPMPKSGKPVGGK*
Ga0114968_1000018330F014513N/AMGDTLEEMVELIKGFVGDSGTCSYERGVKAVNQARRLLWNKRSWSTAEEYVQICCVNNCFTLPSRYEQIRLAWIGDDSVSLSDEWFNATNAFALQAGNSCHRGITEIGGLHVLFRDYTTNPYQLGIIAEDIADVGVELMFEVQDQYDTYHHVNLFAAQSPNLAKTELLVKGVRSVSKPVTKGRIRVYAYDMELQARTLISIYQPNDANPSFRRFKAPKTCECITLYVSKRYFDLTEPKELLEFSADAMIYAVLALNSRENRKAQEFMQNLALAVQEQEKEMESVEIPTAAPIRFANYSRADNLIGSDLLSPTPNDYFLYR*
Ga0114968_1000018334F075040N/AMKDTPTVKKETTEKPAVQSELQREIYLRLVSAAASDGKFELGKLPNAQSVVKQGDHLKGVSELLASCYEK*
Ga0114968_1000018336F061533N/AMSNQLAGIEQKDIIKRVTGKVTKLWEPKTFTGPKGEFVIQGGDIEIDGETYGLKFFNNTQEQSIKGNVVTLSSVRGKHGMTGVSLEHESYEGKNGKVDRDIIKVTATGKVEFDLPSEEPARVSSTPKTIVTDNPEQALDEIVEMHQYIDSLVRMAYLGKITDEETLRSYVSSVFIEANRKGIHYSSGIVAPKKEEPKADEFDPKDWASAIVPSGSHKGEKLAEIGKKDLTKLYQFYLEKGFTTPFSKCVEQAAIDFNLDAPVEEDADDIPY*
Ga0114968_1000018337F089880N/AMKKKPELELFSPTQEGIIVPLSKYLTQMAEYVKTEWPGINITETHIKKAWAKVIKNEYLEDDAPDEMLEMFEKMSADLDMAEEMAEERLANPVVEAEVTEDEPVNESLALVESVKDGLELSSFTQKFDIGSGMTQCVPRGQVEMKDWVAAFAFGLTLESGAQWIIGDSVVALENAGHDDVVNQLCANFKKSYPTVSGYARACRAFPSDKRDPMLPFTVYREIGNANFGEDSAKKQGELLEAAKTEKLSSTEVRNRVRSEQGKDDKPMGHRYLLLNVGNFSNSEVLRSMPQEVEEHQLLIDLSDKSWFDPAEGEWLKFLKEQ*
Ga0114968_1000018339F015061N/AMSEQTPQNETSKAVLEAFTFIKSADETLNERVHAMASLLHTASMMVIKSESRKGEGFECIKYLELAFMYYQNAQFRKRFDEPEKEKDDQPLLFTP*
Ga0114968_100001834F058252GGAMTTNNTFESRIICEGTEVSESPTKILFGQRFNQCWVRKSDIRVKETLGFLDGEKMIRIVVPEEVANTLELEGILD*
Ga0114968_100001835F023326N/AMSRVFSSNKGVRRYGIQFGENMDDLGIELYCYSISRGEYGKNLCNKQNINLSDFKLLSPHEHFINAVKLQWPTEVSIVNGKYTNTQLLRTLEELCNNQDICLAGAASMGKSFPVGLWIYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLWKCARVQFGKLIDYRHMIVWGGASNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITARVNLSANKDVTFIGIGNPSAGDNPHTRWAMPKGSSNFDSVSPDMDKWETETGVCLFYNGMRSPNFAAPANEPSPFPFLMDRRMQQMMLKQCYGDENAIDYVRNAIGWWPKSGFAQTIITADLIRNADTNEEPLWDSEGFTKVAGFDTAFTIGGDRCVLTIAKLGFVRGTRNRVMWLESQKVIQLSANAAAEFEIQLATEVVGLCRSAGVQPSKFGMDVSGDGGRVGQAIIREWLRFDSMGAAIALISSMGKPTDRIAAEVDKRPCKDVYDRLVSEYYYSCYHAFKSRVLFGIDPASDLARELCLRRYTIKSKKIAIETKDELKGRTGYSPDLSDSLIYALEMARRNGLIFIGNDKPVPTNRFWARDEVSIDTTPDDDYGSDDNGDW*
Ga0114968_100001836F021128AGGMKLKNKNLAPVGGWYWKYEIKRDNLTFPAIVYGSTWNSLMQNIEKDYRSNGIELPINIEQMVEDQTCQRQPSDRCWYSDGLGDKIAQAIHTVAAVTDKVLGTQLENKARGCSSCNRRRNTLNSLS*
Ga0114968_100001839F040160N/AMTTEKVKSLCAAITSHEDWNKLQAYLLLNVNPPEGVTTLIHAIKTIEAIGTEEQGAFKKTKVAGKHKEPADITVDPDLDEG*
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