Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10000329 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10000329 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34956
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (55.36%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

34956

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (55.36%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000332	Metagenome / Metatranscriptome	1283	Y
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F024113	Metagenome / Metatranscriptome	207	Y
F083916	Metagenome	112	Y
F092064	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100003291	F083916	N/A	NAPYCKASDYVVIWNNIAEWAGTADSSETRALIIHGYKDAIAREKK*
Ga0114968_1000032927	F092064	N/A	MKKAPKQIIAFLRNPSTWNADAFETAIRNEVENSTGALTASDELLIGSLVLVVETLVKAHIGLLEHGAIYHYNAGDAPSPYYKIRTESMDKAIKILAELALVARGRPKIKNKASEVDELFATA*
Ga0114968_1000032945	F014737	GAG	MTTINAVTGSQINHAEFVKLTVGNAATVYTFCNAAAPITVGGITFANLGALLNVGDVQRDIKATSDDMTIALTGIDPTNVGIILGNDIKGSLVEVWRGFFDSNNQIITTPTTQFFKRYQGIINSVSVTEDFNSEARTRIATCSISCSSMRRILENRLSGVKTNQNNWQFIYAGDTSMNRVSEISNTYFDFGSPPMTQTQASETTVTLDSSSTGGD*
Ga0114968_1000032946	F023109	GGTGG	MIRQATRYDIPRLLEIVEAYAYENPIKKLGEPCNHFPRYVEELLFSIIQGRGFIYVDSHLRGAIVAYKSSNIWSPKVKELNELLWWVEPEHRNGTVGGRLWKAFDERAKEMLKAGDVDFVCTSISANGPLIDYTRRGYKALGATFVRE*
Ga0114968_1000032949	F024113	GGA	MAIFNKNTLAQVSGFDNPILAGELVWNQKTYWNLTFTNSANGLPVDLTGATLNAQIVRRELSNIIDTRNGLTFDIADYNPAPAAIPLTITNIVAAAGSCTLVIDASAWSLMSNDPELEINAVDPVGYSGRVKVSFPVSGSTPADDSIIFLLFLVRSDGVIVL*
Ga0114968_1000032956	F000332	GGA	MKWLILLFALVIAGAVAKDGCHVREFYGIGYTIHNPSERHQQMIQWLKNNAPYCKASDYVVIWNNIAEWAGTADSSETRALIIHGYKDAI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10000329

Overview

Ecosystem & Geography

Associated Families

Sequences