Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10000416 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10000416 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31631
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	37 (69.81%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

31631

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

37 (69.81%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F001713	Metagenome	648	Y
F001799	Metagenome / Metatranscriptome	632	Y
F002099	Metagenome / Metatranscriptome	593	Y
F002487	Metagenome / Metatranscriptome	554	Y
F014143	Metagenome / Metatranscriptome	265	Y
F035670	Metagenome	171	Y
F060706	Metagenome	132	Y
F067527	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000041615	F060706	GGAG	MSKLARDDNGQLSQIYNLGTTQVMTVTASSVQSTAIASDCTIIRLANGSAAHCHFQIGTNPTASLTTSPMLPPSAVEYIKVTGGDKVAVIRGATATDVSITQVN*
Ga0114968_1000041622	F001799	GGA	MDKHLVAKWARNLLDDDFFIEVIDNLKKEQISVIINTSAEESDRREDAYRHIKTIQLITGHLEGLASETVIRDKKWKIL*
Ga0114968_1000041638	F002099	N/A	LGYAVKWIAALVLVLALNSTSKDLCSVREFYSIAWGIHDPTERHKQMAEWLTKHQHLCKSTDFSVIWNNLAEWGGTSDSHNLRALVISGYKTALEREKK*
Ga0114968_1000041639	F067527	GGA	VIIPSKWFPSVQPKYDFQTVVFDKAVEKVQEDYKLAMKAHKIEIKIEELEVELYNKKARVNQLELTMFTNRKLDFYV*
Ga0114968_1000041643	F000166	AGG	MSNIPTPEHSELFAQSVRKWQQILSLCDWRIEKGSKPAKEAMASVEFNQTARLATYRLGDFGAEKITPESLDKTALHELLHVFLYDLLCVATDPKSSDEDIEMQEHRVINLLEKLLSKDSNGRT*
Ga0114968_1000041651	F002487	N/A	MTKLTRQDAIQDLQGTYCCYCAELKTSGSCCHENHFVPFEDLYEEDKEAMIQEYLSEGN*
Ga0114968_1000041652	F014143	GGAG	MNTHYLTHVRKIFSTYDAPPEVIRSYQKQWVKSVRQLGDKWLVAKPIERIQ*
Ga0114968_100004167	F001713	AGGA	MKYEFDTTTGEGSVIVTVVMEYERDEEGTYNENIDEVWFEGRNVMGIFTDQQFKELEIEGCMRLQKHILEQADEAKIAAYE*
Ga0114968_100004168	F035670	AGG	MTNLNIFEKAMGWRKRQMVTTQVGRNEIVKKIRNDTLEEVAKEFDKMKGFGNTSQSFATFVRDMKHE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10000416

Overview

Ecosystem & Geography

Associated Families

Sequences