NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10000480

Scaffold Ga0114968_10000480


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10000480 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30028
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (78.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F001097Metagenome / Metatranscriptome780Y
F003265Metagenome / Metatranscriptome496Y
F060723Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0114968_100004801F060723GAGMSEVTHKQIYDRLVEVESKVDSIDKNTKGLVEAFDALQGAFKVLGWVASAAKPIL
Ga0114968_1000048031F001097GAGGMNFYWPINDTTRIRTLQGLRSPRVAQTLPSQEVDEWLKESVKLVAGCVRGLGANQRRVRYFGFETTHEQDSK*
Ga0114968_1000048045F000166N/AMSNIPTTEDAQYFAQCVKKWQEVLNLGDWRLEKGLKPAKQAMASVEFNEAARLAVYRLGDFGAEKITHQSLDCTALHELLHVMLHDLLTAAQDPKSSQDDIDKQEHRVINLLERLLKDSDGRS*
Ga0114968_1000048050F003265N/AVSAKAPCTVSDFYALSWLGNPSERHQRLSEWLTTNGDNCSSEQLVLIWNNLAAWAGVADSAEMRGKVLYYYSRAIEREKK*
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