NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10000723

Scaffold Ga0114968_10000723


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10000723 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24779
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (80.77%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001106Metagenome / Metatranscriptome776Y
F035307Metagenome172Y
F056615Metagenome / Metatranscriptome137Y
F058150Metagenome / Metatranscriptome135Y
F077287Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0114968_100007231F001106N/ANNAIIEEPNKGEYMSFETLKVAELRKVAEDFAVDTDGLKNKADIVAALAEEGVTWSVYQKTVEDIKKSSDEFSEEAEEILPRFNPDAQPENTMLVRMTRENYRYDILNYTFTKEHPFVAMTSEDAQEIFDKEEGFRLATPKEVQEYYA*
Ga0114968_100007232F058150N/AMEILVGSNSPVTHKVFWQGQLTDSDSLPVVKLYDITEDPAISPPINPGTILATLTAIKSEVDAGTYIVYIPLTYTNRQRQIRLNWSYTVGSVAAQKDHKIYVQTPYTDMSQAIDSLGLGSDFSDPNSKSYFELCSAERYARKLIEAYTQQQFYLYDDVQIAYGSGSDVLPLPYKLAELHELYMNDILLLNTLTNVNNWNYNTIISESGFGIRINRANMLDNTVYTANGMVPPPINDNYNGVFSNGSTYRVQGRFGWEEVPDEVDLACIELMKDYFSKDKVWRNKYMKSIQTFDWRFEYNSGTYSGTGNLYADQLLLPYVINKMVVI*
Ga0114968_1000072323F077287GAGMYSYSQVEKYMGKAYAMKDVSALLNKHTVTLHDYILEGKIKAPQKIYPIGDPDNKNWSKYMFCEKDILELHEFILDSGHSGNVPSRTELLGLLKHNIILYTKTDSGFIPVWKAE*
Ga0114968_100007233F056615N/AMYDLADSIMPLFADIYKQFDIQDPDTGSIKKQWQFDRTVPCSAKGIITNSASSRSGDKQIISNKYTNYQSLEIRTSEKLTLREKITNIRDAEGTIIWEELDFPTNTPTVYELMGTTPITDPFGGVIAYNSAVKRSENQTIGQ*
Ga0114968_100007234F035307GGALDNSSLLVTAASGLQKTMVGTKGAILKDSTVAQISAAIYYQAEVVSKITTSKQFQAKFQSVIFKQLQQDFGFYIDAQARVNPQSLHHVYEWNKVGNSGSRLFKLNITERNGLSFKLGSTFLMSKSLVPNSFGKRKYVFKNKASVMEAGMPVIISPRAAKRLVFETSTGTVYMPIGASVTVTRPGGGKATGRFQIAYARFFTGNLVNLSIKRSGFQQIFNSSLTKAMRLPSEVKKVKYSFSANTLNMQAESAIASAFGGI*
Ga0114968_100007235F000258GGGGGMTVDYKADIMLDLRKYLWSQLKSNNIFAATDYYSDNIGQEIVPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWAICCEQILFTIYSTDVSEINQIRNLMTDLFRRMDDSARDANAYSGISSKFKFFSIFVADISPTAPSEELAGFLSADVILEVKYARHLDPTGRFL*
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