Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10000727 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10000727 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24745
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (34.21%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (50.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

24745

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (34.21%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F007260	Metagenome / Metatranscriptome	354	N
F009603	Metagenome / Metatranscriptome	315	N
F010835	Metagenome / Metatranscriptome	298	N
F013412	Metagenome / Metatranscriptome	271	N
F013879	Metagenome / Metatranscriptome	267	N
F028809	Metagenome	190	N
F039136	Metagenome	164	N
F050365	Metagenome / Metatranscriptome	145	N
F076018	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_100007271	F076018	N/A	GDRAGPIILRERTCYCSTNPMSLSTDYLLLNIGHSTLKWHLSRIKSGSFTIDQLAMFYAPDPKKSVYKTVTRGLEELVKMKPENLPIQLR*
Ga0114968_1000072712	F002843	N/A	MIVPVNIVAVQCNQNNSLFVTTGVDYDNSGSIVGSEITSQYTLNPGDSLEGQPTEVVSIANALWTPAVVAAYKAANPVVEAAQPTE*
Ga0114968_1000072717	F007260	GAG	MGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGSNGDRLLQESGNFLLQENTDRLLLTFGKMLPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK*
Ga0114968_1000072718	F013879	N/A	MTPTVTVDTSRFDAAWKEYLPKTKRSLADAVNARTFFLMLRLYCLLPPKSPQAARNKILDYFNRPVGADRFDKKTGKRVGKSRQLRVVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSCVTKAIKKLSPSFQQFGGTRRAKKGSAGVKSVAGNQALINLANQYGLPQENVAMHRGSSAYAFNAKAGFNPSSHVRMNIGLADNQVGTVEGIYSKAMQQAYNDEARELENHIAAALQAAFDGSESKGITVT*
Ga0114968_1000072719	F010835	AGGA	MNAVALRTERALVDWLAAEDWSASPLGTPTCLTSYGHGAFADPDLEDQMPSFPRIVVRASTAVPVHPTERTCEIDITATLQLSADDTSEAQALAVVQIFENLLQYLYVDGNIAELDALDTDPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANTI*
Ga0114968_100007272	F050365	N/A	MNQTDYVKHSGLTKGRVSQLTAAGMPLTSPEEADAWRGSRKGIGGRPSTLQRMTAIQQQPSPELAGGPYRPPEASAAINAALATEDSPQGAYERQKKIERAAYDLAVEALQSRSLDAGRMVSVHATAAKNLISSRDDVLAQSEKERTLVSGAWVKKAMQEHDGAVSQLLKSMPKQLSGRIAPHDPEHAERELERWVQEVCLKTLHQTDPWKS*
Ga0114968_100007273	F028809	GGA	VEILNCQKPSGIESLRQNRIAIKAIERQTGFEFLGISNDEPSRIDGFIYDPAKGIISASYEVKTRNYGLIKLKTTFGNRWMISWSKLQAALEVSRHTKLPFFGILHLHDDDLVMMQEIFNRSASWAANHQVTEKTVNGRSEKVALIDMSGAAHYQIKSGQITEELF*
Ga0114968_1000072731	F013412	GGAGG	MRHLWARGFGRLHSDAEIITTDDGKQFLIAVIEFEKRTLGNGKPYAQRVTFRSFDAEDMDSVNLLIEGTHIMFDGDCDAVADKSSTGWWYANPRITGRISEIIPSGHES*
Ga0114968_1000072734	F039136	N/A	MTIEIKYTASVFTPAGWRGVTITAKATKTSEKMALVVEVLEINGESPKSDMSRTGASRQRYNGNSISCREVGAKKRLSACEILN*
Ga0114968_100007275	F009603	GGA	LRTTYASKAALTLLEALTAKLTVSANSMESGNVVRSTSSSDVSVEFAEPGKGTAAPIEMLQMWESLLTDYDYAVTLLAGDAIPSPTDLQIYNKMLSAVLVSTTRYYADFTQFRREATTRMS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10000727

Overview

Ecosystem & Geography

Associated Families

Sequences