Basic Information | |
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Taxon OID | 3300009155 Open in IMG/M |
Scaffold ID | Ga0114968_10000925 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 22333 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (77.42%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001059 | Metagenome / Metatranscriptome | 790 | Y |
F001915 | Metagenome / Metatranscriptome | 617 | Y |
F003521 | Metagenome / Metatranscriptome | 481 | Y |
F004695 | Metagenome | 427 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114968_1000092511 | F001915 | AGGAG | MEWKLAHPMYDVADIVWMSDTFFGTEADGILKRDKAVFTKNVTIAATVQLFDKNREFIAVCRTPDERLLGFCWYDRGGYTTYASEEISNAKFHHVDLTLPAKTRVKLVHQMIDQHILWANVCGIPVICSTSIRSEHDGFMKIHKKRGFTVNGSYAWLRTEEGMKCLMK* |
Ga0114968_1000092518 | F001059 | AGG | MAYDIEALKADLPTAKDLAQFVYDKTQISLDLIGKPKDDQYQVAKNALEGKKIPSDYMTDLNPYLDKKELIPEDAIKQLPPRSADLPPEDARVHFFGATNMPHPTDPQSDRKVQINFRKYDNGVITFQVMGPLEKTAVGKRINKFGQEQPEKYTWLDPRTPETMLRRADGTYTEKGRGLYAYCSGEKGGGIWPLVDRDLTNFTQKNVTDPWA* |
Ga0114968_1000092521 | F004695 | AGGA | MLDKQNIIVEYIEAPSGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVNPGVDYATAIITKCLMPNGKVNFEFERFSELDSEQAVQATEMVKYMINSKNDSYQIIRDWAQDSLLHKNGIVMVSPVREPITQYKDVEGTRDQLRVFETMAADKGLTVKRQNMRKIDVDLAAAAQETMGGDQQDNPMESISDSLNSHTIYRAQYKMTGFSTSVRIKHVAQHYFVCNPTISNIQDQDFLGFYDPMTIHECKAQFPYVDIEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWLRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATAIARAEMAFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDSNKHVFEFQPMQGNLAYVQSSMQRFEADKMAMIGMTSPSDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYIVWKTLIQYSDDYNIQQLANVCAQGKPFMDAKSMDNYEFIDRKLINIDLALGFMSDENRLTRQQLIGQAQQAFAQSIMQLDPSVPELFAKVRRPYEDTLRVLGVKDVDAYLPTLEEAAKMFQAKSQQPPSPEHEEISSRTALNKAKTDETVAKTLFTQKKAEDVDTDNMFEALAAKRGKLSAVEID* |
Ga0114968_1000092522 | F003521 | AGGA | MKSLVLNIRNFFNRRTRVEDSKKEANVNRRTLVIENGESASRLMRNEDFALLFNLYRFYLLERLEDCRTDPERIDNAHAVAGVRDFIGFVEKTEYLGKVAIKTNT* |
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