Basic Information | |
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Taxon OID | 3300009155 Open in IMG/M |
Scaffold ID | Ga0114968_10001932 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15951 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (84.85%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020909 | Metagenome | 221 | Y |
F024097 | Metagenome / Metatranscriptome | 207 | N |
F025466 | Metagenome / Metatranscriptome | 201 | Y |
F054668 | Metagenome / Metatranscriptome | 139 | Y |
F058137 | Metagenome | 135 | Y |
F096878 | Metagenome / Metatranscriptome | 104 | N |
F101146 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114968_1000193211 | F020909 | GAG | MITKRGKKVRAIAIAVGIILIWQIAMNLWWVGIDAPNAEFLGWCWGSMSECVVL* |
Ga0114968_1000193212 | F058137 | N/A | MVGKKIRSVRVSEQVWAKAKAKAQSEGKSVSEVIVDFLKGYIK* |
Ga0114968_1000193219 | F025466 | AGGA | MMFDKVKFEAIVMTYLRAGIASVLALYLADPNQPVKNYLVAGLAAVAGPVLKALDSKSTEFGRGSK* |
Ga0114968_1000193222 | F054668 | AGGAG | MGISTRQVTVTTAATALVDATTEAEMVYLHSSSGTCFVGNSDVTSSTGYKMDNGDKITIENKANGIWAITNSGTVTMQVLAIGK* |
Ga0114968_1000193232 | F101146 | AGGAG | MAYTVISDREVCGKKKGESITDKELVDAGVSAEALIAANHIKTSNAVSPSIKPATEGVTN |
Ga0114968_100019325 | F024097 | GGAG | LANPNGRKGALFETSVMKWLREHGVSAERLSKAGSADEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEANNYAVARGLEQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE* |
Ga0114968_100019326 | F096878 | AGGTGG | LINRDPLFSVHNALNGDVVIYLEERDANCDLVEDILTQVPMGSIQAINALIGLDLKSIESARLMDKARSAVPELAIKLASVSESEALTLAEQLITAVKYARAMRSQPLATKLELVK* |
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