NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10005624

Scaffold Ga0114968_10005624


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10005624 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9288
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019079Metagenome / Metatranscriptome231Y
F024263Metagenome206Y
F075664Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1000562417F024263AGGAMSVKIEASDSMLPSLDSLKTTALPMHKLYFELSSVDTWYAIMREARAQFGKNWRSQAHVKRRLEHASLWRVGGCTERVWFEVPDPAFGTWVAIKHAVRQVEPGK*
Ga0114968_100056242F019079AGGAMKKIFAILALAITGTAFAADSFTVEGQHINNAGAAAQQQYVLGVKKEFNGFAGDLAFSNAQTEGTNSLSTRLEAGATVAGPVGLYARAAVGQKYSNTTDFSYYSVEPGISAAVPGVAGLTGKFGYRFRSAFDGSQNNDQTQTARYSLAYALSKDDTVAVKYDRVKGDSNQKVIAVAYTRGF*
Ga0114968_100056245F075664AGGAMNFRNWCREKWYEHLDELISYGLEPQLTAQEYFDRYKFWLKREFKHQQGVK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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