Scaffold Ga0114968_10011407

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114968_10011407

Scaffold Ga0114968_10011407

Overview

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10011407 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6362
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	3
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037222	Metagenome	168	Y
F049420	Metagenome	146	N
F095158	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1001140710	F037222	AGG	MATTTPTPTLPKHLSWLETLTQTYAQMALAGGDQAQKQGRRDYLVARFVELEQDFPGITAMIHQKIKAMK*
Ga0114968_1001140711	F049420	N/A	MSFKNQLMPVKEPLDGGKSDLLCSVDGCNSRWSVRIDGQLPKCSHHQWQQPKVGNTKTYQQYLADKNSPGVPPVSTWYNKEPW*
Ga0114968_1001140714	F095158	N/A	MMQSIPNAIPQGVFLGNIMKQTYIVEFHSTDTESGWSRMEFTSLSKALGFVSVMVKRGCHCQIFQS*

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