NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10012690

Scaffold Ga0114968_10012690


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10012690 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6005
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005502Metagenome / Metatranscriptome398N
F007747Metagenome / Metatranscriptome345Y
F016963Metagenome243N
F043284Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1001269011F043284AGGMKLLSVINKLNETRDKAIELVGRTISLASDAGEIISVARTEGKDVQAICEEAGITEEVGKRYEKVAATQKRLSSGDADPSLMRQTYLRIGILPDPITMSEPSEPKHFLFPIMKARQWLASRGAKFIAQDKALKEQF
Ga0114968_100126904F016963AGGAMIEILPEQSTHEQLLNRVRSLARELAEAKAALAAAEGRENDLIERIRSGL*
Ga0114968_100126905F005502AGGAGMRMLLSFIALLGFTTTKLGNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFNAMRLPKVAMVEVMK*
Ga0114968_100126908F007747AGGAGGMKDLGKITFGKARPAPKQVLVDVTYDAKTAKKLHAFGLKQLKKDPEAVIEYVIVKALGAFAKK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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