Scaffold Ga0114968

Basic Information
Taxon OID	3300009155 Open in IMG/M
Scaffold ID	Ga0114968_10012898 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009155 Open in IMG/M

Scaffold ID

Ga0114968_10012898 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5953
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (76.92%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

5953

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (76.92%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001731	Metagenome	644	Y
F002433	Metagenome / Metatranscriptome	559	Y
F004430	Metagenome / Metatranscriptome	438	Y
F010982	Metagenome	296	N
F016529	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1001289811	F010982	GGA	MIMVRLSRADEIVAHTAGLARESTYGSNPKFQGNKGNFHNAVVIHSEAAGAEIAVARYLGIDNFTPTVNTFKNEPDINWDGVAIEVKQTPHRNGHFIVSNDDRDSDMGILVVGESPTYYIAGWIPVGVAKRSRFASSSGGWWVSQVNLQPIENLLKSHHAPASI*
Ga0114968_1001289812	F016529	GAG	MRQLQFDCSICAKLYGDGRKMHGLTKGAELTLNEWFTQCSGCGAFGIKIIDDAMVAGLE*
Ga0114968_100128982	F001731	GGA	MSVFNPVWRVTIGGVQYQTSILANLTMTSGRTNIYEQAQAGYTNIELINLDQANVIIEINDSLTIELQDSTATFIPIFGGSVVEVGISVAELGNVAYAQHIKIIALGALARLPKALTNGVLTQDFDGNQIKKILRQVLFAQWQSVPAALQWDTYDPATQWQNAQNTGLGEIDTPGNYELAQRSSSRTDVYSLVAALANSGLGYIYEDAQGLISYADSTHRTTYLSLNGYVDLSANNAQGSGLSIQQRTGDVRNTITLKYGTNSTSEVSATDIASVGLYGQLAQIFTTTVKHSADAQDQANFYLDLRAYPQYNFNQITYQLTNPEIDDGDRDSLINVFMGMPVAIADLPLNMAAGTYLGFVEGWTFQAAYNQISLSLNLSPLAYSLQAMRWNDVPVVETWNSIIPTLDWENATQVA*
Ga0114968_100128984	F004430	GGA	MAKGYEVLTMLIPDGGWVITGNDYEGIKFSECKPITKAQFESGFAQFDAWKVAQDIKAASDKAALLAKLGISSEEAALLLS*
Ga0114968_100128987	F002433	AGGA	VSVGEWTAVGALVLAVLTAIYSSMRVIVRSIMSELSPNGGSSMKDQVSRIEARLDQLILEMALKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114968_10012898

Overview

Ecosystem & Geography

Associated Families

Sequences