NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10021775

Scaffold Ga0114968_10021775


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10021775 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4400
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F048248Metagenome / Metatranscriptome148Y
F076942Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1002177510F076942N/AMDSKVIVIADEATGTVINVSENNPQYGYVKLQQVRNVIDDNGFLRRKPVNALLPGTVEDLKMLNLFAGQAMTGKIVIEEGLEPFNKKTPERDLKIAGDTGIVCTWQGLPIYRRTKFTFDSIQEDSYQKHDNVDELRAAYANSVKSNTSAIQNAAGQDFSIEA*
Ga0114968_1002177511F000716N/AMKKMEKLKKNVTDYQLNAGKTYINYESDGYSQYQNYLYKRALYGLDALSQEELEATCSKKKQRIINVYKRAQSVLNIEKQKATINYTNVLFKSLFPNSKLTEALIENSEIDEKFKNTLTFKDLNISKKQIVTIFMIEGILPKNFLSLIEGPNQLPRLKHENKA*
Ga0114968_100217758F048248N/AMKISVTYEDSDVAKALGKIIKDPNADQFIKLFTPMICTSQQATEYFFKLMLGNKLPELIPYGTLCKLHINQLGYGSNKEAIKDQFADELGNVIVTVKDFRGYHEYSQYHVEYSNILENGTIKKETTYVQSKDLEVIEDL*
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