NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10027630

Scaffold Ga0114968_10027630


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10027630 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3832
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002092Metagenome / Metatranscriptome594Y
F018537Metagenome234Y
F030760Metagenome / Metatranscriptome184N
F059953Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1002763010F002092N/AMRTTNQKAIEYLKGNPIVANFINKLNIQRKDYYVKADMPSQYKELVVEVGQKYIRLWQGTGCWGFISRVDGDLKGSPIKKGDLLKCATWKAPAKHARGNIIDGTARYGVYGPDYL*
Ga0114968_1002763011F059953N/ALELTLMELNDLYYVVSKGVESHKELVEIAKRTTPELEKYFDKELSKSIQLLDKIQTALHNEYQVMDDEPEYDSAGFTEDDRMQEVKSEKKLFTLNNDR*
Ga0114968_100276308F018537N/AMASNRTPNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKGWYKTGQNDVPWRVAQYIDIYLHHANPNRMRIWKKQGMERKNLQLNDTNVMIARTLGSMGCSLADGVKHSEQSKGIPALQAIKSLQHQTQMQDPKFRRKEMKRKYMNKAYHLQKGDWGFIAQSLLDYTETSGKLTFTQLKTYYDVILRGKPKMENGGSFIHHLQSLVSPANALGRRCKRYLHKELVTGKYRIATM*
Ga0114968_100276309F030760N/AMNYKTLHDIKIVSQSGDKITIKGLSYSVIMTIAKSNTELQSITITKQYDKKIK*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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