Scaffold Ga0114977

Basic Information
Taxon OID	3300009158 Open in IMG/M
Scaffold ID	Ga0114977_10000059 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009158 Open in IMG/M

Scaffold ID

Ga0114977_10000059 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	73120
Total Scaffold Genes	79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	61 (77.22%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

73120

Total Scaffold Genes

79 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

61 (77.22%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F001464	Metagenome / Metatranscriptome	689	Y
F003408	Metagenome / Metatranscriptome	488	Y
F008245	Metagenome / Metatranscriptome	336	N
F038675	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114977_1000005923	F000258	GGAG	MTNYKLDVTSDIRKYLWAQLKRHNVFDVHDYYIDSLDKEIIPIIPVQQQPELNQFLSGKKHIVYDKINMSYDSLWAICEEQILFCIYATDISEINEIRNLMVDLFRRMDESARDINRSGEISNTFKFHTITMIDISPVSPSEEIQGFLGTDIVLEVKYSRESNSAGRFI*
Ga0114977_1000005926	F003408	N/A	MTKTEEDKRIFLAAIQGIELGKDKEETEGPTFDDVRLKALGIEASKDDIVSLQGQIAAESGFGIGAGLGYSKE*
Ga0114977_1000005939	F001464	N/A	MARQKRNHVRKAFLYFFLNNKIHKVLRSSRAKDELVAWVYEDKKRVMYSYSQVEKNMESAYTMTQVASILNKHRVTIHDYILEGKVKTPQKIYSIGNGNDSKWSKYMFNQSDILGIHEYILDSGHSSELPSKAEILALLKTNLILYTKTAEGKFVPVWKAE*
Ga0114977_1000005954	F008245	AGG	MTEDKNTLELISNITEFNDLHEFMQDEHLDKALSIVVKLLMNPDVPSAKAPMLIMELQAMSTKFAVMSSVYSTIAKDKAGTVNNNKKNVYYSVKESIDKLVDALKYVVRYNS*
Ga0114977_1000005958	F038675	AGG	MKLYQSKDWLYRRYVVQKKSITEIAKECNVSAMTIQRHVEQFGLGKKK*
Ga0114977_1000005961	F000369	AGAAG	MTNEIEPAVHFDRMNKVVEELLKGNSATQIATLTGFSRKEVLEFIDEWKIVVHNDTNIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGQLSVKSASLKLIADIETKRISMLQSIGVLENTQIASQIAETERKQEVLVGILKEVTAGCSKCKMDVAKRLSQITGIVESVVIEDANVV*
Ga0114977_1000005963	F000376	AGGA	MSEYQEKAKLCKCCSKHVPLPTVLREYEGITVCPTTFSNILEYKRIWQSFESRPPGSVRKHFSEYVQQIIESTIDKTKEQTI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114977_10000059

Overview

Ecosystem & Geography

Associated Families

Sequences